FC930335

Overview
NameFC930335
Unique NameFC930335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 3 
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            MA PVSAIGF GYEKRLE++F E  +FADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVL
Sbjct:    1 MAAPVSAIGFEGYEKRLEITFSEASIFADPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVL 68
[Close]
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 3 
Query:  525 PVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            PVSAIGF GYEKRLE++F E  VFADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVL
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVL 75
[Close]
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 3 
Query:  525 PVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            PVSAIGF GYEKRLE++F E  VFADP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVL
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVL 75
[Close]
BLAST of FC930335 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.649e-17
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 3 
Query:  519 ALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 719
            A PVSAIGF GYEKRLE++F E  VF DP GRGLR+LS+ Q+D +L  A CTIVS LSN+  DSYVL
Sbjct:    9 ASPVSAIGFEGYEKRLEITFSEAPVFVDPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVL 75
The following BLAST results are available for this feature:
BLAST of FC930335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_HORCH8.741e-1967.65S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_ORYSJ7.400e-1869.23S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI7.400e-1869.23S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_MAIZE1.649e-1767.16S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]

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Properties
Property NameValue
Genbank descriptionC34006D07EF PostHarvC1 Citrus clementina cDNA clone C34006D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930335 ID=FC930335; Name=FC930335; organism=Citrus clementina; type=EST; length=719bp
GAAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAACAGAG
TTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTGG
TCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTTA
TATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAGA
AGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAGC
ATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTGC
TTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCCA
TACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAG
TTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACT
TCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGT
TTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGGAGG
TTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTG
ATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAA
ATACTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAATA
TCTTGATTCATATGTCCTC
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