FC930338

Overview
NameFC930338
Unique NameFC930338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_DANRE (Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_CHICK (Casein kinase II subunit beta OS=Gallus gallus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_BOVIN (Casein kinase II subunit beta OS=Bos taurus GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYIQD FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_SPOFR (Casein kinase II subunit beta OS=Spodoptera frugiperda PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WISWFC LRGNEFFCEVD+DYI D FNL GL+ QVP+Y  ALD+ILD+E
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_DROME (Casein kinase II subunit beta OS=Drosophila melanogaster GN=CkIIbeta PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            W++WFC LRGNEFFCEVD+DYIQD FNL GL+ QVP Y  ALD+ILD+E
Sbjct:    9 WVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_CAEEL (Casein kinase II subunit beta OS=Caenorhabditis elegans GN=kin-10 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDVE 693
            WI+WFC LRGNEFFCEVD++YIQD FNL GL+ QVP Y  ALD+ILD+E
Sbjct:    9 WITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLE 57          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2B_SCHPO (Casein kinase II subunit beta OS=Schizosaccharomyces pombe GN=ckb1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDV 690
            W+ WF  L+GNEFFCEVD+D+IQD FNL GLS +VP+Y  +LDLILDV
Sbjct:   16 WVDWFLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDV 63          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CK2B_DICDI (Casein kinase II subunit beta OS=Dictyostelium discoideum GN=csnk2b PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILD 687
            WI W+CNL+GNEFF  +D+DYI DDFNL GLS  V +YD AL +ILD
Sbjct:   23 WIPWYCNLKGNEFFATIDEDYINDDFNLTGLSSLVQFYDSALGIILD 69          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2C_NEUCR (Casein kinase II subunit beta-2 OS=Neurospora crassa GN=ckb-2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 31/48 (64.58%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDV 690
            W  WF + RGNE+FCE+D+DYI D FNL GL+ +V YY YALDLI DV
Sbjct:   16 WRDWFISSRGNEYFCEIDEDYITDRFNLTGLNTEVQYYQYALDLITDV 63          
BLAST of FC930338 vs. ExPASy Swiss-Prot
Match: CSK2C_DROME (Casein kinase II subunit beta' OS=Drosophila melanogaster GN=CkIIbeta2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 1
Query:  547 WISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSGQVPYYDYALDLILDV 690
            WI WFC  RGNEFFCEVD++YIQD FNL  L   V  Y  AL++ILD+
Sbjct:    9 WIHWFCKQRGNEFFCEVDEEYIQDKFNLNFLDSNVKNYKCALEVILDL 56          
The following BLAST results are available for this feature:
BLAST of FC930338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CSK2B_DANRE3.599e-1777.55Casein kinase II subunit beta OS=Danio rerio GN=cs... [more]
CSK2B_CHICK3.599e-1777.55Casein kinase II subunit beta OS=Gallus gallus GN=... [more]
CSK2B_BOVIN3.599e-1777.55Casein kinase II subunit beta OS=Bos taurus GN=CSN... [more]
CSK2B_SPOFR1.368e-1675.51Casein kinase II subunit beta OS=Spodoptera frugip... [more]
CSK2B_DROME3.047e-1673.47Casein kinase II subunit beta OS=Drosophila melano... [more]
CSK2B_CAEEL8.866e-1673.47Casein kinase II subunit beta OS=Caenorhabditis el... [more]
CSK2B_SCHPO2.184e-1468.75Casein kinase II subunit beta OS=Schizosaccharomyc... [more]
CK2B_DICDI3.153e-1365.96Casein kinase II subunit beta OS=Dictyostelium dis... [more]
CSK2C_NEUCR9.175e-1364.58Casein kinase II subunit beta-2 OS=Neurospora cras... [more]
CSK2C_DROME3.855e-1162.50Casein kinase II subunit beta' OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC34006D11EF PostHarvC1 Citrus clementina cDNA clone C34006D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930338 ID=FC930338; Name=FC930338; organism=Citrus clementina; type=EST; length=707bp
GAATCCTCTCTCTTCCTCTCTAAATCTGTCATTCTCTTTGCCCTGTTTTT
TTAACTCAATAATAATCTCTAGCAAGAGACAGCATGGGCTGAGCCGCTAA
GCCTTATATATATATAAAAAAAAAAAAAAACACACACAAACTGCTTCCCA
TCAAAAACCCTAGGCAGGGTTAGTGTGGTAATTTCTCGCGCCATGTGTCG
GTGGTAATCGTGTAGCCTTTAATTAAAAAAAATCGTCATCGGCGAAGGAG
GATACAAGATGTATAGAGAGAGAGGGACCGGTGGGTCCAAGTCGGAAGTG
GTTGTCGGACCAGTTGATCGGAAGCGGATTAACGATGCATTAGATAAGCA
GCTGGAGAGATCTTCGCCCTCCACTTCGAGAACGACGATCAACGGCAAGG
ATATGTCCGTTCTCTTGGGGAAGCATCCGGCTGATCATCAGCGAGACTCT
CGCTCCGCTTCTCTCTCCAAAAATCATGCTTCTGATGAATCTGAAACAGA
CAGTGAAGAGTCAGATGTCAGTGGTTCTGAGGGAGATGACACATCTTGGA
TCTCATGGTTTTGCAATCTTCGAGGAAATGAATTCTTCTGTGAAGTGGAT
GATGACTATATACAAGATGATTTTAACCTCTGTGGGCTAAGCGGTCAAGT
TCCATATTATGATTATGCACTTGACTTGATTTTGGATGTTGAGTCCTCTC
ATGGTGA
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