FC930369

Overview
NameFC930369
Unique NameFC930369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            + VSAIGF G+EKRLE+SF +PG+F+DP GRGLRSL+K Q+     PAECTIVSS +NE
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANE 59          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            + VSAIGF G+EKRLE+SF +PG+F+DP GRGLRSL+K Q+     PAECTIVSS +NE
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANE 59          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            + +SAIGF G+EKRLE+SFFEPG+F DP G+GLR+LSK Q+     PAECTIV S +NE
Sbjct:   25 MALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAQLDEILGPAECTIVDSLANE 83          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            + +SAIGF G+EKRLE+SFFEPG+F DP G+GLR+LSK  +     PAECTIV S +NE
Sbjct:   16 MTISAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAHLDEILGPAECTIVDSLANE 74          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM2_BRAJU (S-adenosylmethionine decarboxylase proenzyme 2 OS=Brassica juncea GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/61 (67.21%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            + VSAIGF GYEKRLEVSFFEP +F D  G+GLR+L K QI     PAECTIVSS SN+ L
Sbjct:    1 MSVSAIGFEGYEKRLEVSFFEPSLFVDTHGKGLRALPKSQIDEILAPAECTIVSSLSNDEL 61          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            MA PVSAIGF GYEKRLE++F E  +FADP GRGLR+LS+ QI    + A CTIVS  SN+
Sbjct:    1 MAAPVSAIGFEGYEKRLEITFSEASIFADPHGRGLRALSRAQIDSVLDLARCTIVSELSNK 61          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            + +SAIGF G+EKRLE++FFEP +F DP G+GLR+L K Q+     PAECTIV S +NE
Sbjct:    1 MAISAIGFEGFEKRLEITFFEPSIFVDPEGKGLRALCKAQLDEILGPAECTIVDSLANE 59          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_HELAN (S-adenosylmethionine decarboxylase proenzyme OS=Helianthus annuus GN=SAMDC PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  531 SAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            SAIGF G+EKRLE+SFF PG   DP  RGLRSL+K+Q+     PAECTIVSS SN+ L
Sbjct:    3 SAIGFEGFEKRLEISFFNPGPSVDPVARGLRSLTKNQLDKFLAPAECTIVSSLSNDLL 60          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM1_ARATH (S-adenosylmethionine decarboxylase proenzyme 1 OS=Arabidopsis thaliana GN=SAMDC1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            + +SAIGF GYEKRLEV+FFEP +F D  G GLR+L+K Q+     PA CTIVSS SN+ L
Sbjct:    1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQL 61          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  525 PVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            PVSAIGF GYEKRLE++F E  VFADP GRGLR+LS+ QI    + A CTIVS  SN+
Sbjct:   11 PVSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNK 68          
The following BLAST results are available for this feature:
BLAST of FC930369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_VICFA7.567e-1566.10S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]
DCAM_PEA7.567e-1566.10S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM1_DIACA7.567e-1564.41S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM2_DIACA1.686e-1462.71S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_BRAJU1.686e-1467.21S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM_HORCH1.093e-1363.93S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_SPIOL1.864e-1359.32S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]
DCAM_HELAN2.434e-1365.52S-adenosylmethionine decarboxylase proenzyme OS=He... [more]
DCAM1_ARATH7.082e-1360.66S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_ORYSJ9.250e-1365.52S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006G09EF PostHarvC1 Citrus clementina cDNA clone C34006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930369 ID=FC930369; Name=FC930369; organism=Citrus clementina; type=EST; length=712bp
GAAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAACAGAG
TTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTGG
TCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTTA
TATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAGA
AGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAGC
ATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTGC
TTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCCA
TACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAG
TTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACT
TCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGT
TTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGGAGG
TTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTG
ATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAAATTGGATGA
AATACTGAACCTGCGGAATGCACAATTGTTTCTTCGNTGTCAAATGAATA
TCTTTGATCATA
back to top