FC930385

Overview
NameFC930385
Unique NameFC930385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: YOF5_CAEEL (Uncharacterized oxidoreductase ZK1290.5 OS=Caenorhabditis elegans GN=ZK1290.5 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 51/167 (30.54%), Postives = 87/167 (52.10%), Query Frame = 2
Query:  212 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            VL+   ++P IGLGT  +GG      + +    GYR ID A  YG E ++G A+      S+ RE++FL++ L+  ++  +++ N  + S + L   YLD+Y++H P+            P    +++       +K W+ ME L +   VR+IGVSN+ +  + EL
Sbjct:    6 VLSNNVEMPLIGLGTTHSGGYYHDAVLHSIKKCGYRLIDTAKRYGVEKQLGIAVKNC---SVPREEMFLSTKLW-PVDCGDEVYNAFQTSCEKLQTDYLDMYMIHMPQL-----------PDWIVNQK----ETKEKTWRQMELLYEDEHVRSIGVSNYSIEDLDEL 153          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: DKGB_CORSS (2,5-diketo-D-gluconic acid reductase B OS=Corynebacterium sp. (strain SHS752001) GN=dkgB PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            LN G      GLGT+   G+  V A+  A+  GYR +D A  Y NE EVG A+  +   S+ R+++ + S +    +   +  + +R SL  LG+  +DL L+HWP  S                     + R    W+ M    ++GLVR+IGVSNF    +K L
Sbjct:    9 LNDGRPFAEPGLGTYNLRGDEGVAAMVAAIDSGYRLLDTAVNYENESEVGRAVRAS---SVDRDELIVASKIPGRQHGRAEAVDSIRGSLDRLGLDVIDLQLIHWPNPS---------------------VGRWLDTWRGMIDAREAGLVRSIGVSNFTEPMLKTL 150          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: Y1744_MYCMM (Uncharacterized oxidoreductase MMAR_1744 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=MMAR_1744 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 50/166 (30.12%), Postives = 75/166 (45.18%), Query Frame = 2
Query:  191 SPGSSYFVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNF 688
            SP +    LN    +P +G+G      +    AV  AL +G R ID A  YGNE  VG A+  +    + R ++F+T+ +  + +         + SL  LG+ Y+DLYL+HWP  +A  + DA     ++  E                     G  R+IGVSNF
Sbjct:    6 SPSAPSIALNDENTMPVLGMGVAGLSDDETERAVSAALEIGCRLIDTAAAYGNEAAVGRAIAAS---GIPRAELFVTTKVATADHGFTASREACKASLDRLGLDYVDLYLIHWPAPAAGKYVDAFGGLIQARGE---------------------GFTRSIGVSNF 147          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: Y1987_MYCUA (Uncharacterized oxidoreductase MUL_1987 OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_1987 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 50/166 (30.12%), Postives = 74/166 (44.58%), Query Frame = 2
Query:  191 SPGSSYFVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNF 688
            SP +    LN    +P +G+G      +    AV  AL +G R ID A  YGNE  VG AL  +    + R ++F+T+ +  + +         + SL  LG+ Y+DLYL+HWP  +   + DA     ++  E                     G  R+IGVSNF
Sbjct:    7 SPSAPSIALNDENTMPVLGMGVAGLSDDETERAVSAALEIGCRLIDTAAAYGNEAAVGRALAAS---GIPRAELFVTTKVATADHGFTASREACKASLDRLGLDYVDLYLIHWPAPAVGKYVDAFGGLIQARGE---------------------GFTRSIGVSNF 148          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: KAR_YEAST (NADPH-dependent alpha-keto amide reductase OS=Saccharomyces cerevisiae GN=YDL124W PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 61/181 (33.70%), Postives = 84/181 (46.41%), Query Frame = 2
Query:  206 YFVLNTGAKIPAI---GLGT-WQTGGEL-------CVEAVKTALSV-GYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKEL 712
            +F LN G KIPAI   G GT W    E         VE +  AL + G  +ID A +Y    EVG+AL    K    R  +FLT      +   +   + + ++LK +G  Y+DLYL+H P  S    G +                 L++AWK ME L  SG  + IGVSNF V  ++ +
Sbjct:    7 FFTLNNGNKIPAIAIIGTGTRWYKNEETDATFSNSLVEQIVYALKLPGIIHIDAAEIYRTYPEVGKALSLTEK---PRNAIFLTDKYSPQIKMSDSPADGLDLALKKMGTDYVDLYLLHSPFVSKEVNGLS-----------------LEEAWKDMEQLYKSGKAKNIGVSNFAVEDLQRI 167          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: Y3816_MYCA1 (Uncharacterized oxidoreductase MAV_3816 OS=Mycobacterium avium (strain 104) GN=MAV_3816 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 2
Query:  170 EMKGRFASPGSSYFVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWP 532
            E+ G   S   S   LN    +P +GLG  +   +    AV  AL VG R ID A  YGNE  VG A+  +    + R ++F+T+ L  S        +    SL+ LG+ Y+DLYL+HWP
Sbjct:    3 ELTGESGSAAPS-IALNDENTMPVLGLGVAELSDDETERAVSAALEVGCRLIDTAAAYGNEAAVGRAIAAS---GIPRAELFVTTKLATSDQGFKGAMDACEASLERLGLDYVDLYLIHWP 119          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: GS69_BACSU (General stress protein 69 OS=Bacillus subtilis GN=yhdN PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.680e-12
Identity = 57/180 (31.67%), Postives = 83/180 (46.11%), Query Frame = 2
Query:  212 VLNTGAKIPAIGLGTWQTGGEL--------CVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTS--TLYCSMNSINKIENYVRV------SLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQI 703
            + +TG +   IGLGTW  GG +         +E ++ AL  G   ID A  YG   +  E + +A K   KR+ V L +   L    N + +  N  R+      SLK L   Y+DLY +HWP           DP           L  +++  + M+ L D+G +RAIGVSNF + Q+
Sbjct:    6 IADTGIEASRIGLGTWAIGGTMWGGTDEKTSIETIRAALDQGITLIDTAPAYGFG-QSEEIVGKAIKEYGKRDQVILATKTALDWKNNQLFRHANRARIVEEVENSLKRLQTDYIDLYQVHWP-----------DP-----------LVPIEETAEVMKELYDAGKIRAIGVSNFSIEQM 162          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: Y3007_MYCPA (Uncharacterized oxidoreductase MAP_3007 OS=Mycobacterium paratuberculosis GN=MAP_3007 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 2
Query:  173 MKGRFASPGSSYFVLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWP 532
            M G   S   S   LN    +P +GLG  +   +    AV  AL VG R ID A  YGNE  VG A+  +    + R ++F+T+ L  S        +    SL+ LG+ Y+DLYL+HWP
Sbjct:    1 MTGESGSAAPS-IALNDENTMPVLGLGVAELSDDETERAVSAALEVGCRLIDTAAAYGNEAAVGRAIAAS---GIPRAELFVTTKLATSDQGFKGAMDACEASLERLGLDYVDLYLIHWP 116          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: Y1669_MYCLE (Uncharacterized oxidoreductase ML1669 OS=Mycobacterium leprae GN=ML1669 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 50/158 (31.65%), Postives = 69/158 (43.67%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNF 688
            LN    +P +GLG  +   +    AV  AL +G R ID A  YGNE  V  A+  +    + R  +F+T+ L        K ++    SL  LG+ Y+DLYL+HWP            PP          + +   AW  M      G  R+IGV NF
Sbjct:   15 LNDENTMPLLGLGVAELSEDETERAVLAALEIGCRLIDTAAAYGNEAAVSRAIAAS---GIPRAQLFVTTKLATPDQGFTKSQDACNASLDRLGMDYVDLYLIHWPA-----------PP----------VGQYVDAWGGMIQSRGEGHARSIGVCNF 148          
BLAST of FC930385 vs. ExPASy Swiss-Prot
Match: Y1669_MYCLB (Uncharacterized oxidoreductase MLBr01669 OS=Mycobacterium leprae (strain Br4923) GN=MLBr01669 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 50/158 (31.65%), Postives = 69/158 (43.67%), Query Frame = 2
Query:  215 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNF 688
            LN    +P +GLG  +   +    AV  AL +G R ID A  YGNE  V  A+  +    + R  +F+T+ L        K ++    SL  LG+ Y+DLYL+HWP            PP          + +   AW  M      G  R+IGV NF
Sbjct:   15 LNDENTMPLLGLGVAELSEDETERAVLAALEIGCRLIDTAAAYGNEAAVSRAIAAS---GIPRAQLFVTTKLATPDQGFTKSQDACNASLDRLGMDYVDLYLIHWPA-----------PP----------VGQYVDAWGGMIQSRGEGHARSIGVCNF 148          
The following BLAST results are available for this feature:
BLAST of FC930385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
YOF5_CAEEL1.856e-1330.54Uncharacterized oxidoreductase ZK1290.5 OS=Caenorh... [more]
DKGB_CORSS1.856e-1331.932,5-diketo-D-gluconic acid reductase B OS=Coryneba... [more]
Y1744_MYCMM3.166e-1330.12Uncharacterized oxidoreductase MMAR_1744 OS=Mycoba... [more]
Y1987_MYCUA5.400e-1330.12Uncharacterized oxidoreductase MUL_1987 OS=Mycobac... [more]
KAR_YEAST2.052e-1233.70NADPH-dependent alpha-keto amide reductase OS=Sacc... [more]
Y3816_MYCA12.680e-1236.36Uncharacterized oxidoreductase MAV_3816 OS=Mycobac... [more]
GS69_BACSU2.680e-1231.67General stress protein 69 OS=Bacillus subtilis GN=... [more]
Y3007_MYCPA4.571e-1236.67Uncharacterized oxidoreductase MAP_3007 OS=Mycobac... [more]
Y1669_MYCLE1.018e-1131.65Uncharacterized oxidoreductase ML1669 OS=Mycobacte... [more]
Y1669_MYCLB1.018e-1131.65Uncharacterized oxidoreductase MLBr01669 OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionC34007A04EF PostHarvC1 Citrus clementina cDNA clone C34007A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930385 ID=FC930385; Name=FC930385; organism=Citrus clementina; type=EST; length=713bp
GCTGCTGGAGTTCATTGAGTCAAGTTGACAAACACTTGGCCTGCACTTTT
TAATACTGTCAAAAGCTTTGAAGTGAAAAAAAAAATGCAAACTCTCGTCN
TGGGTTTTGTGATTTTTGGTTTGATTTGGTATCTGTGTTTTTGATCTTTT
TTTCTTTTTGTTCATTTGGGAAATGAAAGGGAGATTTGCTAGTCCAGGGA
GTAGTTACTTTGTGTTGAACACAGGAGCTAAAATTCCAGCCATTGGATTG
GGAACATGGCAAACTGGGGGAGAGCTTTGTGTTGAGGCTGTGAAAACAGC
ATTGTCAGTGGGTTACCGTAATATAGATTGTGCTCATCTTTATGGGAATG
AGATTGAAGTTGGGGAAGCACTTGATGAAGCTTTCAAAGGATCTCTCAAG
AGAGAGGATGTGTTCCTGACCTCAACTCTCTATTGTAGTATGAATTCAAT
CAATAAGATTGAAAATTACGTCAGAGTGTCTCTTAAGAATCTTGGAGTTT
CATATTTGGATCTCTATTTAATGCATTGGCCTGAGTGCTCTGCTTCTGGT
TTTGGGGATGCTACTGATCCTCCTTCTAAGTCCGGGAGTGAGCGTAGGCA
GTTTTTAAATCGCTTGAAGAAAGCATGGAAAGCCATGGAAGGTCTCGTGG
ACTCGGGATTGGTCAGAGCTATTGGTGTCAGTAATTTTGGGGTTTCACAG
ATCAAAGAGTTGC
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