FC930436

Overview
NameFC930436
Unique NameFC930436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33
Identity = 79/190 (41.58%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G ++++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.524e-33
Identity = 80/190 (42.11%), Postives = 112/190 (58.95%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G +V++     +F  G TN +PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M Y   A E A   ++R L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F
Sbjct:    1 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNHTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHYNKQATENAKDEVRRVLGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWF 186          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 79/190 (41.58%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 79/190 (41.58%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 79/190 (41.58%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.983e-32
Identity = 78/190 (41.05%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   ++R L  L+ +L + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVRRILGLLDAYLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_CARAU (Elongation factor 1-gamma OS=Carassius auratus GN=eef1g PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.934e-31
Identity = 79/190 (41.58%), Postives = 112/190 (58.95%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK  IAA+Y+G  +K+A     F  G TN+SP FL   PLGKVP  +  DG  +FESNAIA +++    ++ L GS+    A V QW+ F+  EI    S W++P LG MQ+   A E A   +KR L  LN HL + T+LVG  V+LADI ++C+L + +K ++   F   +P+V R+F
Sbjct:    6 LYTYPENWRAFKAQIAAQYSGARLKIASASPAFTFGQTNRSPAFLSNFPLGKVPAYQGDDGFCLFESNAIAHFLS----NDALRGSTPQASAQVLQWVSFADSEIIPPASAWVFPTLGIMQFNKQATEQAKEEVKRVLAVLNQHLNTRTFLVGERVSLADITVVCSLLWLYKQVLEPAFRQPYPNVTRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.526e-31
Identity = 78/190 (41.05%), Postives = 112/190 (58.95%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK  IAA+Y+G  +K+A     F  G TN+SP FL   PLGKVP  +  DG  +FESNAIA Y++    ++ L GS+    A V QW+ F+  E+    S W++P LG MQ+   A E A   +KR L  LN HL + T+LVG  ++LADI ++C+L + +K ++   F   +P+V R+F
Sbjct:    6 LYTYPENWRAFKAQIAAQYSGARLKIASAPPAFTFGQTNRSPAFLGNFPLGKVPAYQGDDGFCLFESNAIAHYLS----NDVLRGSTPQASAQVLQWVSFADSEVIPPASAWVFPTLGIMQFNKQATEQAKEEVKRVLAVLNQHLNTRTFLVGERISLADITVVCSLLWLYKQVLEPAFRQPYPNVTRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.597e-31
Identity = 77/191 (40.31%), Postives = 116/191 (60.73%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSS-LIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   +N   +K LIAA+Y+   +K+A +   F+ G+TNK+PEFLK  PLGKVP  E  +G  +FES+AIA YVA    +++L GS+  +  A V QW+ FS   +    S W++P LG MQ+   A E A   +K  L  L+ HL + T+LVG  +TLADI + C+L + +K ++  +F   + +V R+F
Sbjct:    6 LYTYPDNWRAYKPLIAAQYSRFPIKVASSPPEFQFGLTNKTPEFLKKFPLGKVPAFEGNNGFCLFESSAIAHYVA----NDELRGSNNRLHQAQVIQWVGFSDSHVVPPASAWVFPTLGIMQFNKQATEQAKEEIKTVLGVLDCHLQTRTFLVGERITLADITLTCSLLWLYKQVLEPSFRQPYGNVTRWF 192          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_DROME (Elongation factor 1-gamma OS=Drosophila melanogaster GN=Ef1gamma PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 77/190 (40.53%), Postives = 111/190 (58.42%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGP-VFESNAIARYVARLKADNQLCGSSL-IDYAHVEQWMDFSAMEIDANISRWLYPRLGYM--QYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   +K LIAA+Y+G +VK+A+NF+ G TNKS EFLK  P GKVP  ET +G  + ESNAI    A L A+ QL G       A V+QW+ F+  EI      W++P LG +  Q    A++ A A L++    LN  L   T+L G  +TLADIV+  +L + +++++  +  S F +V R+F
Sbjct:    6 LYTYPENFRAYKALIAAQYSGAQVKVADNFKFGETNKSAEFLKKFPGGKVPAFETAEGQYLSESNAI----AYLLANEQLRGGKCPFVQAQVQQWISFADNEIVPASCAWVFPLLGILPQQKNSTAKQEAEAVLQQ----LNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRWF 187          
The following BLAST results are available for this feature:
BLAST of FC930436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_RAT3.524e-3341.58Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1G_PIG3.524e-3342.11Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]
EF1G_MACFA6.011e-3341.58Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HORSE6.011e-3341.58Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1G_BOVIN6.011e-3341.58Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1G_HUMAN2.983e-3241.05Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1G_CARAU1.934e-3141.58Elongation factor 1-gamma OS=Carassius auratus GN=... [more]
EF1G_DANRE2.526e-3141.05Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1GB_XENLA9.597e-3140.31Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G_DROME3.195e-2640.53Elongation factor 1-gamma OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC34007E08EF PostHarvC1 Citrus clementina cDNA clone C34007E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930436 ID=FC930436; Name=FC930436; organism=Citrus clementina; type=EST; length=703bp
CTCCACAAAAACCCTAGTTCGCTTCTTTTTGTCGCTCTCTTTTTTTTAAA
CTCCCAGTCGCTCTGTGGCCTTTCAGGAGAACGCTCGCATTCATCTGTAA
TTTGAGCGAATCGTTTCTCCGTTAAGCCATGGCTCTGGTCTTGCATGTTG
GGCAGGAAAACAAAAATGGATTCAAAGGACTCATTGCTGCTGAGTACGCT
GGTGTGGAAGTCAAATTGGCTGAGAATTTTGAGATGGGTGTCACTAATAA
ATCCCCTGAATTTTTGAAGATGAACCCTCTTGGGAAGGTTCCTGTGTTGG
AGACACCTGATGGTCCGGTTTTTGAGAGCAATGCCATTGCCCGTTATGTT
GCACGTCTGAAAGCTGACAATCAACTATGTGGTTCTTCTCTGATCGATTA
TGCTCATGTTGAGCAGTGGATGGATTTTTCTGCCATGGAGATTGATGCTA
ATATCTCCAGGTGGTTATATCCAAGACTTGGATATATGCAATACATTCCT
CTGGCTGAGGAAGGTGCTGTTGCCGCACTGAAGAGAGCATTGGATGCTTT
GAACATTCATTTGGCTTCAAATACGTACTTGGTTGGCCATTCTGTCACCC
TGGCTGACATTGTCATGATATGCAATTTATATTATGGATTTAAGCACATC
ATGACGAAGACTTTCACCTCTGAGTTTCCCCATGTTGAGAGATACTTTTG
GAC
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