FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEAE (Phosphoenolpyruvate carboxylase OS=Pseudomonas aeruginosa GN=ppc PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.400e-51
Identity = 115/241 (47.72%), Postives = 148/241 (61.41%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA   SDVLAV+LL K++        G   P   +RVVPLFET+ DL  AG  + +LL++  YR  +    +G QEVM+GYSDS KDAG  TAAW  Y+AQE +V  C +  +++ LFH           P + AI SQPPGSV G  R TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP  P E  WR  M+ ++K +   YR  V ++P+F+ YF  ATP+ ELG
Sbjct:  467 SLGSYVISMAGQPSDVLAVQLLLKES--------GVDWP---MRVVPLFETLDDLDNAGPCMERLLTLPGYRSRL----SGVQEVMIGYSDSAKDAGTLTAAWAQYRAQEKLVEICRQHEVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRVTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLMPPPAP-EPAWRAQMDRLAKDALLAYRRVVRDDPQFVEYFRLATPEQELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEA7 (Phosphoenolpyruvate carboxylase OS=Pseudomonas aeruginosa (strain PA7) GN=ppc PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.400e-51
Identity = 115/241 (47.72%), Postives = 147/241 (61.00%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA   SDVLAV+LL K++        G   P   +RVVPLFET+ DL  AG  + +LL++  YR  +    +G QEVM+GYSDS KDAG  TAAW  Y+AQE +V  C    +++ LFH           P + AI SQPPGSV G  R TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP  P E  WR  M+ ++K +   YR  V ++P+F+ YF  ATP+ ELG
Sbjct:  467 SLGSYVISMAGQPSDVLAVQLLLKES--------GVDWP---MRVVPLFETLDDLDNAGPCMERLLTLPGYRSRL----SGVQEVMIGYSDSAKDAGTLTAAWAQYRAQEKLVEICRHHEVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRVTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLMPPPAP-EPAWRAQMDRLAKDALHAYRRVVRDDPQFVEYFRLATPEQELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ALISL (Phosphoenolpyruvate carboxylase OS=Aliivibrio salmonicida (strain LFI1238) GN=ppc PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.400e-51
Identity = 112/242 (46.28%), Postives = 148/242 (61.16%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++LG YVISMA  ASDVLAV LL ++A           CP   + V PLFET+ DL  +  V+ +L SIDWYR  I      HQ VM+GYSDS KDAG  +A W  Y A E +V  C +  I++TLFH           P + A+ SQPP S+ G LR TEQGEM++ K GLP+ AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR+ V    +F+ YF  ATP+ ELG
Sbjct:  464 EALGSYVISMARTASDVLAVHLLLQEAG----------CPF-RMDVCPLFETLDDLNRSKEVMEQLFSIDWYRGFI----QNHQMVMIGYSDSAKDAGVMSAGWAQYSAMEALVDVCEKESIELTLFHGRGGTIGRGGAPAHAALLSQPPKSLKGGLRVTEQGEMIRFKLGLPEVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRNIVRGEKDFVPYFRAATPELELG 689          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_HAHCH (Phosphoenolpyruvate carboxylase OS=Hahella chejuensis (strain KCTC 2396) GN=ppc PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.683e-50
Identity = 108/242 (44.63%), Postives = 146/242 (60.33%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            + L  YVISMAS+ SDVL V LL +++ +              + + PLFET++DL+GA   I +LL + WYR++I     G QEVM+GYSDS KDAG+  AAW  Y+AQE +V    +  +K+TLFH           P   AI SQPPGSV G  R TEQGEM++ KFG P+ A +   +Y  AVL A++ PP  P E  WR +M+++S ++  +YR  V E P F+ YF  ATP+ ELG
Sbjct:  468 EGLASYVISMASDPSDVLTVILLLRESGMRHH-----------IPIAPLFETLSDLQGAADSIGRLLDLPWYREYI----GGKQEVMIGYSDSAKDAGQMAAAWAQYQAQEALVKVAAKHDVKLTLFHGRGGTVGRGGGPANRAILSQPPGSVAGNFRITEQGEMIRFKFGQPKVAKQSFNLYLGAVLEASLVPPPEP-EPAWREMMDKLSHLAVNSYREVVRERPGFVEYFRSATPEQELG 693          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_HAEIE (Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae (strain PittEE) GN=ppc PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.311e-49
Identity = 109/236 (46.19%), Postives = 142/236 (60.17%), Query Frame = 2
Query:   26 YVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            YVISMA NASDVLAV LL K+A +              + VVPLFET+ DL  A  V+ +L ++ WYR  I    N  Q VM+GYSDS KDAG   A+W  Y+AQE +V    + GI++TLFH           P + A+ SQPP S+   LR TEQGEM++ K GLP  AV   ++Y +A+L A + PP  P+ E WRN+M+E+S ISC  YR  V  + +F+ YF  ATP+ EL
Sbjct:  471 YVISMARNASDVLAVHLLLKEAGVPYH-----------IPVVPLFETLEDLDAAEKVMTQLFNVGWYRGVI----NNRQMVMIGYSDSAKDAGMMAASWAQYRAQEALVNLTEKLGIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPTVAVETFDLYASAILEANLLPPPEPKPE-WRNIMDELSTISCDIYRGVVRGDKDFVPYFRSATPEQEL 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_HAES2 (Phosphoenolpyruvate carboxylase OS=Haemophilus somnus (strain 2336) GN=ppc PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 106/236 (44.92%), Postives = 140/236 (59.32%), Query Frame = 2
Query:   26 YVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            Y+ISMA  ASDVLAV LL K+A +              L VVPLFET+ DL  +  V+ +L ++ WYR  I    N  Q VM+GYSDS KDAG   A+W  Y+AQE +V  C + G+++TLFH           P + A+ SQPP S+   LR TEQGEM++ K GLP  AV   ++Y +A+L A + PP  P+ E WR +M E+S  SC  YRS V  + +F+ YF  ATP+ EL
Sbjct:  471 YIISMARTASDVLAVHLLLKEAGVTYY-----------LPVVPLFETLDDLNASKEVMTQLFNVGWYRGVI----NNKQMVMIGYSDSAKDAGMMAASWAQYRAQEQLVNLCEKMGVELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPAVAVNSFDLYASAILEANLLPPPEPK-ESWRAIMNELSDSSCNIYRSVVRGDKDFVPYFRSATPEQEL 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_HAES1 (Phosphoenolpyruvate carboxylase OS=Haemophilus somnus (strain 129Pt) GN=ppc PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 106/236 (44.92%), Postives = 140/236 (59.32%), Query Frame = 2
Query:   26 YVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            Y+ISMA  ASDVLAV LL K+A +              L VVPLFET+ DL  +  V+ +L ++ WYR  I    N  Q VM+GYSDS KDAG   A+W  Y+AQE +V  C + G+++TLFH           P + A+ SQPP S+   LR TEQGEM++ K GLP  AV   ++Y +A+L A + PP  P+ E WR +M E+S  SC  YRS V  + +F+ YF  ATP+ EL
Sbjct:  471 YIISMARTASDVLAVHLLLKEAGVTYY-----------LPVVPLFETLDDLNASKEVMTQLFNVGWYRGVI----NNKQMVMIGYSDSAKDAGMMAASWAQYRAQEQLVNLCEKMGVELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPAVAVNSFDLYASAILEANLLPPPEPK-ESWRAIMNELSDSSCNIYRSVVRGDKDFVPYFRSATPEQEL 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PASMU (Phosphoenolpyruvate carboxylase OS=Pasteurella multocida GN=ppc PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 108/236 (45.76%), Postives = 141/236 (59.75%), Query Frame = 2
Query:   26 YVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            Y+ISMA  ASDVLAV LL K++ +              L VVPLFET+ DLR +  V+ +L +I WYR  I    N  Q VM+GYSDS KDAG   A+W  Y AQE +V  C++  I++TLFH           P + A+ SQPP S+   LR TEQGEM++ K GLP  AV  L +Y +A+L A + PP  P+ + WR +M+E+S ISCQ YR  V    +F+ YF  ATP+ EL
Sbjct:  471 YIISMAKTASDVLAVHLLLKESGVPYH-----------LPVVPLFETLDDLRASEQVMSELFNIGWYRGVI----NNKQMVMIGYSDSAKDAGMMAASWAQYCAQEALVNLCDKCNIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPAVAVESLGLYASAILEANLLPPPEPKAQ-WRTVMDELSTISCQIYRDVVRGEKDFVPYFRAATPEQEL 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_HAEI8 (Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae (strain 86-028NP) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 107/236 (45.34%), Postives = 141/236 (59.75%), Query Frame = 2
Query:   26 YVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            YVISMA +ASDVLAV LL K+A +              + VVPLFET+ DL  A  V+ +L ++ WYR  I    N  Q VM+GYSDS KDAG   A+W  Y+AQE +V    + GI++TLFH           P + A+ SQPP S+   LR TEQGEM++ K GLP  AV   ++Y +A+L A + PP  P+ E WR +M+E+S ISC  YR  V  + +F+ YF  ATP+ EL
Sbjct:  471 YVISMARSASDVLAVHLLLKEAGVPYH-----------IPVVPLFETLEDLDAAEKVMTQLFNVGWYRGVI----NNRQMVMIGYSDSAKDAGMMAASWAQYRAQEALVNLTEKLGIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPAVAVETFDLYASAILEANLLPPPEPKPE-WRTIMDELSTISCDIYRGVVRGDKDFVPYFRSATPEQEL 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ALCBS (Phosphoenolpyruvate carboxylase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 110/243 (45.27%), Postives = 142/243 (58.44%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            GS+ LG YVISMA+  SDV+AV LLQK A +              +RVVPLFET+ DL GA   +  LL++ +YR+ +       QE+M+GYSDS KDAG   AAW  Y+AQE + A   + GI +TLFH           PT +A+ SQPPGSV G +R TEQGE+++ K+G P  AV  LE Y  A L AT+ PPQ  R E WR  M+ ++  S   YR  V + PE + Y    TP+ EL
Sbjct:  472 GSEGLGAYVISMATTPSDVMAVMLLQKIAGVREP-----------MRVVPLFETLDDLDGAEQTMSALLALPFYRERVAAG----QEIMIGYSDSAKDAGFLGAAWAQYRAQEKLTALFADNGIPLTLFHGRGGSISRGGSPTRMALLSQPPGSVAGRIRVTEQGEVIRFKYGRPSVAVFNLEQYVAATLEATLLPPQAARPE-WRQQMQALTDTSVAGYRGVVRDEPELVRYLRTVTPETEL 698          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_PSEAE1.400e-5147.72Phosphoenolpyruvate carboxylase OS=Pseudomonas aer... [more]
CAPP_PSEA71.400e-5147.72Phosphoenolpyruvate carboxylase OS=Pseudomonas aer... [more]
CAPP_ALISL1.400e-5146.28Phosphoenolpyruvate carboxylase OS=Aliivibrio salm... [more]
CAPP_HAHCH7.683e-5044.63Phosphoenolpyruvate carboxylase OS=Hahella chejuen... [more]
CAPP_HAEIE1.311e-4946.19Phosphoenolpyruvate carboxylase OS=Haemophilus inf... [more]
CAPP_HAES28.495e-4944.92Phosphoenolpyruvate carboxylase OS=Haemophilus som... [more]
CAPP_HAES18.495e-4944.92Phosphoenolpyruvate carboxylase OS=Haemophilus som... [more]
CAPP_PASMU2.472e-4845.76Phosphoenolpyruvate carboxylase OS=Pasteurella mul... [more]
CAPP_HAEI82.472e-4845.34Phosphoenolpyruvate carboxylase OS=Haemophilus inf... [more]
CAPP_ALCBS2.472e-4845.27Phosphoenolpyruvate carboxylase OS=Alcanivorax bor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
back to top