FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_BORBR (Phosphoenolpyruvate carboxylase OS=Bordetella bronchiseptica GN=ppc PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.102e-31
Identity = 84/242 (34.71%), Postives = 129/242 (53.31%), Query Frame = 2
Query:   29 VISMASNASDVLAVELLQKDARL-AVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRP------PQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            ++S     SD+L V +LQK+A L A  GE     PG  L VVPLFET+ DL+    ++   L +   R+ +       QEVM+GYSDS KD G  T+ W LY+A+  +V   +   +++ +FH            +Y AI +QPPG+V G LR TEQGE++Q+K+   +     LE+   A L +++ P       +    ++    M  +S+++ + YR  VY+ P F  YF  ATP +E+
Sbjct:  540 IVSHTETLSDLLEVLVLQKEAGLIAPPGET--IAPGDGLMVVPLFETIPDLQRGPEIMAAWLDLPEVRQRVRLAQGDTQEVMLGYSDSNKDGGFLTSNWSLYQAERALVDVFSARSVRLRMFHGRGGSVGRGGGSSYDAILAQPPGTVAGQLRLTEQGEVIQSKYKDAEVGRWHLELLVAATLESSLAPQAAATSAEDAHMQQHAPAMSFMSELAQRTYRGLVYDTPGFADYFFAATPISEI 779          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_THET8 (Phosphoenolpyruvate carboxylase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ppc PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.780e-30
Identity = 93/239 (38.91%), Postives = 122/239 (51.05%), Query Frame = 2
Query:   20 GPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G +V+SM  +  D+LAV LL ++  L      GRP P     VVPLFET+ DLR A  V+R+LL    +  H      G  EVM+GYSDS KDAG   A   LY+AQE +     E G+ V  FH           P   AI S PP SV   +R TEQGE +  ++  P  AVR LE       LA + P Q P E +WR  + + ++ S + YR+ + E   F  +F   TP  E+G
Sbjct:  448 GAHVVSMTHHPEDLLAVFLLAREVGLY---RPGRPLP---FDVVPLFETLEDLRRAPGVLRRLLENPVFLAHA--RGRGGVEVMIGYSDSNKDAGFLMANLALYEAQEALSRVGEEVGLPVYFFHGRGTSTARGGGPAGRAIASLPPRSVGRRIRLTEQGEALADRYSHPDLAVRHLEQMLYHFALAALGPGQEP-EARWREALAQAAEESTRRYRALLQEE-GFFDFFEAFTPIREIG 676          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_THET2 (Phosphoenolpyruvate carboxylase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=ppc PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.780e-30
Identity = 93/239 (38.91%), Postives = 122/239 (51.05%), Query Frame = 2
Query:   20 GPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G +V+SM  +  D+LAV LL ++  L      GRP P     VVPLFET+ DLR A  V+R+LL    +  H      G  EVM+GYSDS KDAG   A   LY+AQE +     E G+ V  FH           P   AI S PP SV   +R TEQGE +  ++  P  AVR LE       LA + P Q P E +WR  + + ++ S + YR+ + E   F  +F   TP  E+G
Sbjct:  448 GAHVVSMTHHPEDLLAVFLLAREVGLY---RPGRPLP---FDVVPLFETLEDLRRAPGVLRRLLENPVFLAHA--RGRGGVEVMIGYSDSNKDAGFLMANLALYEAQEALSRVGEEVGLPVYFFHGRGTSTARGGGPAGRAIASLPPRSVGRRIRLTEQGEALADRYSHPDLAVRHLEQMLYHFALAALGPGQEP-EARWREALAQAAEESTRRYRALLQEE-GFFDFFEAFTPIREIG 676          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_METEA (Phosphoenolpyruvate carboxylase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=ppc PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 73/187 (39.04%), Postives = 103/187 (55.08%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAV 571
            ++ G +++SM  +  DVL   LL K+A + +       CP   L +VPLFET+ DLR A  ++++LL I   R+   +   G QEVM+GYSDS KD G   + WELYKAQ  +    N  G+ +  FH           PT+  I +QPPGS+ G  R TEQGE+V  K+    TA  Q+E+   +V
Sbjct:  491 EAFGAFILSMTRSTVDVLGAYLLAKEAGIFLDTTGTEICP---LPIVPLFETIDDLRAAPAIMKELLGIPVVRRST-RWQGGVQEVMIGYSDSNKDGGFIASNWELYKAQVRLTTLGNHLGVPIAFFHGRGGSVSRGGVPTHRGIAAQPPGSIQGRFRITEQGEVVSFKYANRGTAAYQMELLAASV 673          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_CAUCR (Phosphoenolpyruvate carboxylase OS=Caulobacter crescentus GN=ppc PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 82/243 (33.74%), Postives = 122/243 (50.21%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G   LG Y+IS ++  SD+L   +L K   L   G      P  +++V PLFET+ DL     V+R+ L +   R   I      QE+M+GYSDS KD G   +   +      +    +  G+ + LFH           P   A+ +QP G+V G +R TEQGEM+  +FG   TA R L+    AVL+A+ R P P R+ K    M  +++ S + YR+ VY++  F  +F   TP +E+
Sbjct:  488 GHGCLGAYIISKSATLSDMLEPLVLLKQVGLVWGGA----APRASVKVAPLFETIGDLENGPAVLRQWLELPLSRT--ILGDRPVQEIMLGYSDSNKDGGYVASRRGVATGASALAHEADRMGVGLQLFHGRGGSVGRGGGPAAEAVLAQPAGTVQGRIRMTEQGEMIARRFGDQPTARRNLDGLAAAVLMASER-PIPKRDPKVEGAMTALAQSSFEGYRALVYDDAAFEDFFWSVTPISEI 723          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_STRCO (Phosphoenolpyruvate carboxylase OS=Streptomyces coelicolor GN=ppc PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 78/247 (31.58%), Postives = 128/247 (51.82%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREE----KWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G + +  Y+ISM   A DV A  +L ++A     G +        + +VPL ET  +L+ A  ++  LL+   YR+ ++      QEVM+GYSDS K  G  T+ WE+++AQ  +    + +G+++ LFH           PT+ AI +QP G++ G ++ TEQGE++  K+ +P  A   LE+   A L A+     P + +    +W   M+ +S  +   YR  V E+P+   YF  +TP  +L
Sbjct:  479 GPEVIESYIISMCQGADDVFAAAVLAREA-----GLIDLHAGWAKIGIVPLLETTDELKAADTILEDLLADPSYRR-LVALRGDVQEVMLGYSDSSKFGGITTSQWEIHRAQRRLRDVAHRYGVRLRLFHGRGGTVGRGGGPTHDAILAQPWGTLEGEIKVTEQGEVISDKYLIPALARENLELTVAATLQASALHTAPRQSDEALARWDAAMDVVSDAAHTAYRHLV-EDPDLPTYFLASTPVDQL 718          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_STRAW (Phosphoenolpyruvate carboxylase OS=Streptomyces avermitilis GN=ppc PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 78/247 (31.58%), Postives = 128/247 (51.82%), Query Frame = 2
Query:    5 GSDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREE----KWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAEL 733
            G + +  Y+ISM   A DV A  +L ++A     G L        + +VPL ET  +L+ A  ++  +LS   YR+ ++      QEVM+GYSDS K  G  T+ WE+++AQ  +    + +G+++ LFH           P++ AI +QP G++ G ++ TEQGE++  K+ +P  A   LE+   A L A+     P + +    +W   M+ +S  +   YR  V E+P+   YF  +TP  +L
Sbjct:  478 GPEVIESYIISMCQGADDVFAAAVLAREA-----GLLDLHAGWAKIGIVPLLETTDELKAADTILEDMLSDPSYRR-LVALRGDVQEVMLGYSDSSKFGGITTSQWEIHRAQRRLRDVAHRYGVRLRLFHGRGGTVGRGGGPSHDAILAQPWGTLEGEIKVTEQGEVISDKYLVPSLARENLELTVAATLQASALHTAPRQSDEALARWDAAMDVVSDAAHSAYRRLV-EDPDLPTYFLASTPVDQL 717          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_THES7 (Phosphoenolpyruvate carboxylase OS=Thermus sp. (strain 71) GN=ppc PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.140e-27
Identity = 89/239 (37.24%), Postives = 117/239 (48.95%), Query Frame = 2
Query:   20 GPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            G +V+SM  + +D+LAV LL ++  L      G+P P     VVPLFET+ DL  A  V+R+LL+   +R H      G  EVM+GYSDS KDAG   A   LY+AQE + A     GI V  FH           P   AI   PP SV   LR TEQGE +  ++  P  AVR LE        A +     P+   WR  + E  + S   YR+ + +   F  +F   TP  E+G
Sbjct:  447 GAHVVSMTHHPADLLAVFLLAREVGLY---RPGKPLP---FDVVPLFETLEDLERAPEVLRRLLANPVFRAHA--QGRGGVEVMIGYSDSNKDAGFLMANLALYQAQEALHAVGEAQGIPVFFFHGRGTSTARGGGPAGRAIAGLPPKSVGHRLRLTEQGEALADRYAHPDLAVRHLEQLLYHFAQAALGDGVEPKAH-WREALGEAGERSMARYRALLSQE-GFFPFFEAFTPIREIG 675          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_RHOMR (Phosphoenolpyruvate carboxylase OS=Rhodothermus marinus GN=ppc PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.659e-26
Identity = 83/246 (33.74%), Postives = 120/246 (48.78%), Query Frame = 2
Query:   17 LGPYVISMASNASDVLAVELLQKDARL---AVSGELGRP----CPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPP---QPPREEKWRN-LMEEISKISCQNYRSTVYENPEFLAYFHEATP 721
            +G Y++SM    SD+L   LL K+  L         G+P    CP   +  VPLFET+ DL  A   +  +LS   YR  +     G QE+M+GYSDS KD G + A W L++AQE +   C   G+   LFH               AI + PP    G +R TEQGE++  ++ LP+ A R LE    A+L     P        +   RN LM+E++  S + YR  + + P+F +++   TP
Sbjct:  500 VGSYIVSMTHTVSDLLEPMLLAKEVGLWHYERDPRTGKPGHVRCP---IDFVPLFETIEDLEAAASRMEAILSHPVYRMQVAAR-GGFQEIMLGYSDSTKDGGYWMANWALHRAQEQLAEVCLRHGVDFRLFHGRGGTVGRGGGRANQAILAMPPVVHNGRIRFTEQGEVISFRYALPEIAHRHLEQIVNAMLRVVGLPAASGTDGTDPATRNRLMDELAARSMRAYRRLI-DAPDFWSWYTRITP 740          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_BORBR2.102e-3134.71Phosphoenolpyruvate carboxylase OS=Bordetella bron... [more]
CAPP_THET81.780e-3038.91Phosphoenolpyruvate carboxylase OS=Thermus thermop... [more]
CAPP_THET21.780e-3038.91Phosphoenolpyruvate carboxylase OS=Thermus thermop... [more]
CAPP_METEA3.035e-3039.04Phosphoenolpyruvate carboxylase OS=Methylobacteriu... [more]
CAPP_CAUCR2.570e-2933.74Phosphoenolpyruvate carboxylase OS=Caulobacter cre... [more]
CAPP_STRCO2.841e-2831.58Phosphoenolpyruvate carboxylase OS=Streptomyces co... [more]
CAPP_STRAW2.841e-2831.58Phosphoenolpyruvate carboxylase OS=Streptomyces av... [more]
CAPP_THES79.140e-2737.24Phosphoenolpyruvate carboxylase OS=Thermus sp. (st... [more]
CAPP_RHOMR2.659e-2633.74Phosphoenolpyruvate carboxylase OS=Rhodothermus ma... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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