FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEMY (Phosphoenolpyruvate carboxylase OS=Pseudomonas mendocina (strain ymp) GN=ppc PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 9.371e-56
Identity = 120/241 (49.79%), Postives = 154/241 (63.90%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +LG YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG VI +LL +  YR  +    +G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP  P E  WR +M+ ++ +  + YR  V E+P+F+AYF +ATP+ ELG
Sbjct:  467 ALGSYVISMAGAASDVLAVQLLLKEAGLR------RP-----MRVVPLFETLADLDNAGPVIDRLLGLPGYRVRL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEELVRLCGEHQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPAP-EPSWRAMMDRLADVGVKAYRGVVREHPQFVAYFRQATPEQELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SOLTU (Phosphoenolpyruvate carboxylase OS=Solanum tuberosum GN=PPC1 PE=2 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.224e-55
Identity = 114/243 (46.91%), Postives = 152/243 (62.55%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +D  G Y+ISMA+  SDVLAVELLQ++ R+              LRVVPLFE + DL  A   + +L SI+WYR  I    NG QEVM+GYSDSGKDAGR +AAW+LYKAQE+++    EF +K+T+FH           P +LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR LM+EI+ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  521 ADCFGAYIISMATAPSDVLAVELLQRECRVRQP-----------LRVVPLFEKLADLDAAPAAVARLFSIEWYRNRI----NGKQEVMIGYSDSGKDAGRLSAAWQLYKAQEELIQVAKEFDVKLTMFHGRGGTVGRGGGPAHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPE-WRALMDEIAVVATEKYRSIVFKEPRFVEYFRLATPELEYG 747          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHEHH (Phosphoenolpyruvate carboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ppc PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.224e-55
Identity = 123/241 (51.04%), Postives = 153/241 (63.49%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++G YVISMAS  SDVLAV LL K        E G P P   +RVVPLFET+ DL  A   +  L SIDWYR +      G QEVM+GYSDS KDAG   AAW  Y AQE +VA   E  IK+TLFH           P + AI SQPPGSV G +R TEQGEM++ KFGLP+ AV+ L +YT+AV+ AT+ PP  P+ E WR  M+++++ S   YR+ V E P+F++YF  ATP+ ELG
Sbjct:  467 AMGSYVISMASQPSDVLAVLLLLK--------ETGCPHP---MRVVPLFETLDDLNNASACMSALFSIDWYRGYT----KGIQEVMIGYSDSAKDAGVMAAAWAQYTAQEKLVAISQEANIKLTLFHGRGGTIGRGGGPAHEAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLALYTSAVMEATLLPPPEPKPE-WRQCMQQLAEESVLAYRAIVREEPDFVSYFRAATPEIELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEE4 (Phosphoenolpyruvate carboxylase OS=Pseudomonas entomophila (strain L48) GN=ppc PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.224e-55
Identity = 121/241 (50.21%), Postives = 154/241 (63.90%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  AG V+ +LL +  YR  +    +G QEVM+GYSDS KDAG   AAW  Y+AQE++V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP E  WR LM++++    + YR  V +NPEF+ YF ++TP+ ELG
Sbjct:  464 SLGSYVISMAGAASDVLAVQLLLKEAGLT------RP-----MRVVPLFETLADLDNAGPVMERLLGLPGYRAGL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQENLVRICREHQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVGGRFRTTEQGEMIRFKFGLPGIAEQNLNLYLAAVLEATLLPPPPP-EPAWRALMDQLAADGVKAYRGVVRDNPEFVEYFRQSTPEQELG 688          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_FLAAU (Phosphoenolpyruvate carboxylase OS=Flaveria australasica PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 112/243 (46.09%), Postives = 151/243 (62.14%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD  G Y+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L S+DWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYK QE +V    EFG+K+ +FH           PT+LA+ SQPP ++ G+LR T QGE+++  FG      R L+ +  A L   M PP  PR E WR LM++++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  520 SDCFGAYIISMATSTSDVLAVELLQREYHIK-----------HPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGGPTHLALLSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-WRELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFG 746          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP2_FLATR (Phosphoenolpyruvate carboxylase OS=Flaveria trinervia PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 112/243 (46.09%), Postives = 151/243 (62.14%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD  G Y+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L S+DWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYK QE +V    EFG+K+ +FH           PT+LA+ SQPP ++ G+LR T QGE+++  FG      R L+ +  A L   M PP  PR E WR LM++++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  520 SDCFGAYIISMATSTSDVLAVELLQREYHIK-----------HPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGGPTHLALLSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-WRELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFG 746          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP1_SORBI (Phosphoenolpyruvate carboxylase 1 OS=Sorghum bicolor GN=PEPC PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 112/243 (46.09%), Postives = 151/243 (62.14%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            +D  G Y+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L SIDWY   I    NG QEVM+GYSDSGKDAGR +AAW++YKAQE+++     +G+K+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ YT A L   M PP  P+ E WR LM+E++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  516 ADCFGAYIISMATAPSDVLAVELLQRECHVKQP-----------LRVVPLFEKLADLEAAPAAVARLFSIDWYMNRI----NGKQEVMIGYSDSGKDAGRLSAAWQMYKAQEELIKVAKHYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEHSFGEELLCFRTLQRYTAATLEHGMHPPISPKPE-WRALMDEMAVVATKEYRSIVFQEPRFVEYFRSATPETEYG 742          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP1_FLATR (Phosphoenolpyruvate carboxylase OS=Flaveria trinervia GN=PPCA1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 112/243 (46.09%), Postives = 151/243 (62.14%), Query Frame = 2
Query:    8 SDSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SD  G Y+ISMA++ SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L S+DWYR  I    +G QEVM+GYSDSGKDAGRF+AAW+LYK QE +V    EFG+K+ +FH           PT+LA+ SQPP ++ G+LR T QGE+++  FG      R L+ +  A L   M PP  PR E WR LM++++ ++ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  521 SDCFGAYIISMATSTSDVLAVELLQREYHIK-----------HPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGGPTHLALLSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-WRELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFG 747          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_TOLAT (Phosphoenolpyruvate carboxylase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.088e-55
Identity = 114/242 (47.11%), Postives = 153/242 (63.22%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            D+ G Y+ISMA   SDVLAV+LL K+    V  +   P       + PLFET  DL+ A  V+ +LLS++WYR +I     G Q VM+GYSDS KDAG  +A W  Y+A ED+VA      +K+TLFH           P + AI SQPPGS+ G  R TEQGEM++ KFGLP+ A+   ++YT+AVL A + PP  P E  W ++M+++S+ISCQ+YRS V + P+F+ YF  ATP+ ELG
Sbjct:  463 DAFGIYIISMARQPSDVLAVQLLLKE----VGCKFHMP-------IAPLFETQNDLQNAAAVLNRLLSVEWYRNYI----RGQQYVMIGYSDSAKDAGMMSAGWAQYRAMEDLVAIAEREDLKLTLFHGRGGTIGRGGGPAHQAILSQPPGSLKGGFRVTEQGEMIRFKFGLPEVAIHNFKLYTSAVLEANLLPPPKP-EAAWYDVMDKLSEISCQHYRSIVRDEPDFVPYFRAATPEMELG 688          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PHAVU (Phosphoenolpyruvate carboxylase OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.088e-55
Identity = 113/242 (46.69%), Postives = 154/242 (63.64%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            D+ G Y+ISMA+  SDVLAVELLQ++  +              LRVVPLFE + DL  A   + +L S+DWY+  I    +G QEVM+GYSDSGKDAGRF+AAW+LYKAQE++V    +FGIK+T+FH           PT+LAI SQPP ++ G+LR T QGE+++  FG      R L+ +T A L   M PP  P+ E WR +M++++ I+ + YRS V++ P F+ YF  ATP+ E G
Sbjct:  523 DNFGAYIISMATAPSDVLAVELLQRECHVK-----------HPLRVVPLFEKLADLEAAPAALARLFSVDWYKNRI----DGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELVKVAKKFGIKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQCFGEQHLCFRTLQRFTAATLEHGMNPPISPKPE-WRAMMDQMAVIATEEYRSIVFKEPRFVEYFRLATPELEYG 748          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_PSEMY9.371e-5649.79Phosphoenolpyruvate carboxylase OS=Pseudomonas men... [more]
CAPP_SOLTU1.224e-5546.91Phosphoenolpyruvate carboxylase OS=Solanum tuberos... [more]
CAPP_SHEHH1.224e-5551.04Phosphoenolpyruvate carboxylase OS=Shewanella hali... [more]
CAPP_PSEE41.224e-5550.21Phosphoenolpyruvate carboxylase OS=Pseudomonas ent... [more]
CAPP_FLAAU1.598e-5546.09Phosphoenolpyruvate carboxylase OS=Flaveria austra... [more]
CAPP2_FLATR1.598e-5546.09Phosphoenolpyruvate carboxylase OS=Flaveria triner... [more]
CAPP1_SORBI1.598e-5546.09Phosphoenolpyruvate carboxylase 1 OS=Sorghum bicol... [more]
CAPP1_FLATR1.598e-5546.09Phosphoenolpyruvate carboxylase OS=Flaveria triner... [more]
CAPP_TOLAT2.088e-5547.11Phosphoenolpyruvate carboxylase OS=Tolumonas auens... [more]
CAPP_PHAVU2.088e-5546.69Phosphoenolpyruvate carboxylase OS=Phaseolus vulga... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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