FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALDC (Phosphoenolpyruvate carboxylase OS=Salmonella dublin (strain CT_02021853) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALCH (Phosphoenolpyruvate carboxylase OS=Salmonella choleraesuis GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALAR (Phosphoenolpyruvate carboxylase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEF5 (Phosphoenolpyruvate carboxylase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 122/241 (50.62%), Postives = 154/241 (63.90%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA  ASDVLAV+LL K+     SG L RP     +RVVPLFET+ DL  AG V+ KLL +  YR  +     G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E  +++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP +  WR+LM+E++    + YR  V +NP+F+ YF ++TP+ ELG
Sbjct:  465 SLGSYVISMAGAASDVLAVQLLLKE-----SGVL-RP-----MRVVPLFETLADLDNAGPVMEKLLHMPGYRSRL----QGPQEVMIGYSDSAKDAGTTAAAWAQYRAQERLVDICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPP-QPAWRHLMDELASDGVRAYREVVRDNPQFVEYFRQSTPEQELG 689          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_KLEP3 (Phosphoenolpyruvate carboxylase OS=Klebsiella pneumoniae (strain 342) GN=ppc PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 114/241 (47.30%), Postives = 151/241 (62.66%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  L V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  +  L +YT+A+L A + PP  P+ E WR++M E+S +SC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFALPVAPLFETLDDLNNANDVMTQLLNIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTISSLSLYTSAILEANLLPPPEPKAE-WRDIMAELSDVSCKMYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP3_SORBI (Phosphoenolpyruvate carboxylase 3 OS=Sorghum bicolor PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.726e-55
Identity = 113/242 (46.69%), Postives = 150/242 (61.98%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            DS GPY+ISM +  SDVLAVELLQ++  +             TL VVPLFE + DL+ A   + KL S DWY  HI    NG Q+VMVGYSDSGKDAGR +AAW+LY AQE++     ++G+K+TLFH           PT+LAI SQPP ++ G++R T QGE+++  FG      + L+ +T A L   M PP  P+ E WR LMEE++ ++ + YRS V + P F+ YF  ATP+ E G
Sbjct:  518 DSFGPYIISMCTAPSDVLAVELLQRECGIRQ-----------TLPVVPLFERLADLQAAPASVEKLFSTDWYINHI----NGKQQVMVGYSDSGKDAGRLSAAWQLYVAQEEMAKVAKKYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFMFGEENLCFQSLQRFTAATLEHGMHPPVSPKPE-WRKLMEEMAVVATEEYRSVVVKEPRFVEYFRSATPETEYG 743          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SERP5 (Phosphoenolpyruvate carboxylase OS=Serratia proteamaculans (strain 568) GN=ppc PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.561e-55
Identity = 117/241 (48.55%), Postives = 150/241 (62.24%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A           CP   L V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + G+ +TLFH           P + A+ SQPPGS+ G LR TEQGEM++ KFGLP+  +  L +YT A+L A + PP  P++E WR LM+++S  SC+ YR  V ENPEF+ YF  ATP+ ELG
Sbjct:  467 SIAAYVISMARTPSDVLAVHLLLKEAG----------CPFA-LPVAPLFETLDDLNNADDVMTQLLNIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGVALTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYTGAILEANLLPPPEPKKE-WRALMDDLSDTSCKMYRGYVRENPEFVPYFRAATPELELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALPK (Phosphoenolpyruvate carboxylase OS=Salmonella paratyphi A (strain AKU_12601) GN=ppc PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.561e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLEGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SALPA (Phosphoenolpyruvate carboxylase OS=Salmonella paratyphi A GN=ppc PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.561e-55
Identity = 114/241 (47.30%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT+A+L A + PP  P+ + WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNADDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLEGGLRVTEQGEMIRFKYGLPEVTVSSLSLYTSAILEANLLPPPEPK-DSWRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PECCP (Phosphoenolpyruvate carboxylase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ppc PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.561e-55
Identity = 114/241 (47.30%), Postives = 150/241 (62.24%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A  + +           L V PLFET+ DL  A  V+ +LLSIDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI +TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  +  L +YT A+L A + PP  P++E W  +M+E+S++SC  YR  V ENP+F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMARTPSDVLAVHLLLKEAGCSFA-----------LPVAPLFETLDDLNNADDVMTQLLSIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGIALTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTISSLALYTGAILEANLLPPPEPKQE-WHEVMDELSRVSCDMYRGYVRENPDFVPYFRAATPELELG 692          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_SALDC2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella dubl... [more]
CAPP_SALCH2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella chol... [more]
CAPP_SALAR2.726e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella ariz... [more]
CAPP_PSEF52.726e-5550.62Phosphoenolpyruvate carboxylase OS=Pseudomonas flu... [more]
CAPP_KLEP32.726e-5547.30Phosphoenolpyruvate carboxylase OS=Klebsiella pneu... [more]
CAPP3_SORBI2.726e-5546.69Phosphoenolpyruvate carboxylase 3 OS=Sorghum bicol... [more]
CAPP_SERP53.561e-5548.55Phosphoenolpyruvate carboxylase OS=Serratia protea... [more]
CAPP_SALPK3.561e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella para... [more]
CAPP_SALPA3.561e-5547.30Phosphoenolpyruvate carboxylase OS=Salmonella para... [more]
CAPP_PECCP3.561e-5547.30Phosphoenolpyruvate carboxylase OS=Pectobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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