FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHEPA (Phosphoenolpyruvate carboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ppc PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.074e-55
Identity = 122/241 (50.62%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++G YVISMAS  SDVLAV LL K        E G P P   +RVVPLFET+ DL  A   +  L +IDWYR +      G QEVM+GYSDS KDAG   AAW  Y AQE +VA   E  IK+TLFH           P + AI SQPPGSV G +R TEQGEM++ KFGLP+ AV+ L +YT+AV+ AT+ PP  P+ E WR  M++++  S   YR+ V E P+F++YF  ATP+ ELG
Sbjct:  467 AMGSYVISMASQPSDVLAVLLLLK--------ETGCPHP---IRVVPLFETLDDLNNASNCMSALFAIDWYRGYT----KGIQEVMIGYSDSAKDAGVMAAAWAQYTAQEKLVAISQEANIKLTLFHGRGGTIGRGGGPAHQAILSQPPGSVDGRIRVTEQGEMIRFKFGLPKLAVQSLALYTSAVMEATLLPPPEPKPE-WRQCMQQLADESVVAYRAIVREEPDFVSYFRAATPEIELG 691          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_PSEU5 (Phosphoenolpyruvate carboxylase OS=Pseudomonas stutzeri (strain A1501) GN=ppc PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.074e-55
Identity = 121/241 (50.21%), Postives = 150/241 (62.24%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            SLG YVISMA  ASDVLAV+LL K+A L       RP     +RVVPLFET+ DL  A   I +LLS+  YR+ +    +G QEVM+GYSDS KDAG   AAW  Y+AQE +V  C E G+++ LFH           P + AI SQPPGSV G  R+TEQGEM++ KFGLP  A + L +Y  AVL AT+ PP PP E  WR  M+ ++      YR  V E+P F+ YF +ATP+ ELG
Sbjct:  468 SLGSYVISMAHAASDVLAVQLLLKEAGLQ------RP-----MRVVPLFETLDDLNNAAPTIDRLLSLPGYRQRL----HGPQEVMIGYSDSAKDAGTTAAAWAQYRAQEQLVEVCREHGVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPP-EPGWRETMDRLAAEGVAAYRGVVREHPLFVDYFRQATPELELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_EDWI9 (Phosphoenolpyruvate carboxylase OS=Edwardsiella ictaluri (strain 93-146) GN=ppc PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.074e-55
Identity = 118/241 (48.96%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            ++  YVISMA   SDVLAV LL K+A           CP   L VVPLFET+ DL  A  V+ +LLSIDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQE +V  C+  GI +TLFH           P + A+ SQPPGS+   LR TEQGEM++ K GLP+ AV  L +YT+A+L A + PP  P++E WR++M+E+S+ SC  YR  + +NP+F+ YF  ATP+ ELG
Sbjct:  466 AIAAYVISMARTPSDVLAVHLLLKEAG----------CPYN-LPVVPLFETLDDLNNAEAVMTQLLSIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYRAQEALVRVCDNAGIALTLFHGRGGSIGRGGAPAHDALLSQPPGSLKSGLRVTEQGEMIRFKLGLPEIAVSSLTLYTSAILEANLLPPPAPKQE-WRDVMDELSQTSCALYRRYIRKNPDFVPYFRSATPELELG 690          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ENT38 (Phosphoenolpyruvate carboxylase OS=Enterobacter sp. (strain 638) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.933e-55
Identity = 113/241 (46.89%), Postives = 152/241 (63.07%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A ++ +           L V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  +  L +YT+A+L A + PP  P+ + WR++M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SVAAYVISMAKTPSDVLAVHLLLKEAGISFA-----------LPVAPLFETLDDLNNANDVMTQLLNIDWYRGFI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEVTISSLSLYTSAILEANLLPPPEPK-DAWRHIMDELSDISCDLYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP1_CHLRE (Phosphoenolpyruvate carboxylase 1 OS=Chlamydomonas reinhardtii GN=Ppc1 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.036e-54
Identity = 118/242 (48.76%), Postives = 151/242 (62.40%), Query Frame = 2
Query:   11 DSLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            DSLG Y+ISMA  ASDVLAV LLQ++  +       RP     LRVVPLFET+ DL  A   +  LL  DWYR HI    NG QE M+GYSDSGKDAGR  AAW LY+ QE +V      G+++ LFH           PT++AI+SQP G++ G LR T QGE+++ +FG  +   R L++YT+AVL A + PP  P +E WR+LM  ++  SC  YRS VY  PEF  YF ++T  +ELG
Sbjct:  525 DSLGAYIISMAKTASDVLAVVLLQRETGV-------RPA----LRVVPLFETLDDLHNAPGTMTTLLGNDWYRGHI----NGVQECMIGYSDSGKDAGRLAAAWALYETQEKLVEVAAGCGVRLVLFHGRGGTVGRGGGPTHMAIRSQPSGTINGHLRVTVQGEIIEQQFGEKEVCFRTLDLYTSAVLEAALDPPPAPAQE-WRDLMSLLATESCDMYRSVVYRTPEFYDYFMQSTAASELG 750          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHISS (Phosphoenolpyruvate carboxylase OS=Shigella sonnei (strain Ss046) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHIFL (Phosphoenolpyruvate carboxylase OS=Shigella flexneri GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHIF8 (Phosphoenolpyruvate carboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_SHIB3 (Phosphoenolpyruvate carboxylase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELG 692          
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ESCF3 (Phosphoenolpyruvate carboxylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELG 692          
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_SHEPA6.074e-5550.62Phosphoenolpyruvate carboxylase OS=Shewanella peal... [more]
CAPP_PSEU56.074e-5550.21Phosphoenolpyruvate carboxylase OS=Pseudomonas stu... [more]
CAPP_EDWI96.074e-5548.96Phosphoenolpyruvate carboxylase OS=Edwardsiella ic... [more]
CAPP_ENT387.933e-5546.89Phosphoenolpyruvate carboxylase OS=Enterobacter sp... [more]
CAPP1_CHLRE1.036e-5448.76Phosphoenolpyruvate carboxylase 1 OS=Chlamydomonas... [more]
CAPP_SHISS1.353e-5447.72Phosphoenolpyruvate carboxylase OS=Shigella sonnei... [more]
CAPP_SHIFL1.353e-5447.72Phosphoenolpyruvate carboxylase OS=Shigella flexne... [more]
CAPP_SHIF81.353e-5447.72Phosphoenolpyruvate carboxylase OS=Shigella flexne... [more]
CAPP_SHIB31.353e-5447.72Phosphoenolpyruvate carboxylase OS=Shigella boydii... [more]
CAPP_ESCF31.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia fer... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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