FC930444

Overview
NameFC930444
Unique NameFC930444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECODH (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain K12 / DH10B) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECOBW (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain K12 / BW2952) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO8A (Phosphoenolpyruvate carboxylase OS=Escherichia coli O8 (strain IAI1) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO7I (Phosphoenolpyruvate carboxylase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO5E (Phosphoenolpyruvate carboxylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO57 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O157:H7 GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO55 (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain 55989 / EAEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO45 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO27 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELG 692
[Close]
BLAST of FC930444 vs. ExPASy Swiss-Prot
Match: CAPP_ECO24 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 115/241 (47.72%), Postives = 149/241 (61.83%), Query Frame = 2 
Query:   14 SLGPYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFHEATPQAELG 736
            S+  YVISMA   SDVLAV LL K+A +           G  + V PLFET+ DL  A  V+ +LL+IDWYR  I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFH           P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + PP  P+ E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG
Sbjct:  468 SIAAYVISMAKTPSDVLAVHLLLKEAGI-----------GFAMPVAPLFETLDDLNNANDVMTQLLNIDWYRGLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLLPPPEPK-ESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELG 692
The following BLAST results are available for this feature:
BLAST of FC930444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_ECODH1.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECOBW1.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO8A1.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO7I1.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO5E1.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO571.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO551.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO451.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO271.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO241.353e-5447.72Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC34007F05EF PostHarvC1 Citrus clementina cDNA clone C34007F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930444 ID=FC930444; Name=FC930444; organism=Citrus clementina; type=EST; length=736bp
GGGAGGGAGTGATTCACTTGGGCCATACGTCATTTCTATGGCTTCTAATG
CAAGTGATGTCCTTGCCGTAGAGCTTTTGCAGAAAGACGCCCGACTTGCT
GTTAGTGGTGAGTTAGGGAGACCATGTCCTGGTGGAACGCTACGTGTGGT
TCCTCTGTTTGAGACTGTGACGGACTTGAGAGGAGCTGGTTTGGTGATCA
GGAAATTGTTATCAATTGACTGGTATAGAAAGCACATTATAAAAAACCAT
AACGGGCATCAAGAGGTGATGGTTGGATATTCTGATTCTGGTAAAGATGC
TGGACGCTTCACTGCTGCATGGGAACTATACAAAGCCCAAGAGGATGTTG
TGGCTGCCTGCAATGAGTTTGGTATTAAAGTGACTCTTTTCCATGGGCGA
GGAGGGAGTATTGGCCGTGGTGGTGGCCCTACATATCTTGCCATTCAGTC
TCAACCGCCTGGCTCTGTAATGGGAACACTTCGATCGACTGAGCAAGGGG
AGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTA
GAGATATACACAACTGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACC
TCCTCGAGAAGAAAAATGGCGTAATCTCATGGAGGAGATCTCAAAAATTA
GTTGCCAGAATTACCGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCC
TACTTTCACGAGGCTACACCCCAGGCTGAACTAGGG
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