FC930447

Overview
NameFC930447
Unique NameFC930447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 72/196 (36.73%), Postives = 108/196 (55.10%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISRGESSSLALKGAQ 707
            YD   TIFSPEGRLYQVEYA +A+ +AG ++IG+  KD V +V +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + + +   MPV+ L + + D  Q YTQ   +RP GV  +  G+D+    QL+  DP+G++ G K            + L++  KDD   S  E+  +A+   Q
Sbjct:    9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQ 203          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 74/201 (36.82%), Postives = 109/201 (54.23%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQ 710
            YD     FSPEGRL+QVEYA+EAI    +AIGI + +GVVL  EK++TS L+  ST  EK+ ++D H+ CA +G+M+DA  LI  ARV+ Q + + Y E M +E   Q++      +   G         RPFGV+ LFAG +     QL+  DPSG +                  L+  ++ D++  E+  ++L   +Q
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPST-VEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQP-QLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQ 206          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.324e-27
Identity = 72/196 (36.73%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            YD     FSPEGRL+QVEYA+EA+    ++IGI + +GV+L  EK+ TSKL+  + + EK+ K+D H+    AG+++D+  L+  A+++AQ + + Y   + VE + QS+ +      QFG         RPFGV+ LFAG D+  G +L+  DPSG +   K              LK+ Y D ++  E   +AL
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLM-VNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLA---LQFGDDDVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMAL 198          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 67/193 (34.72%), Postives = 104/193 (53.89%), Query Frame = 3
Query:  120 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            S  +D   TIFSPEGRLYQVEYA +AI     + + + S D  V+  +KKVT K +   T T  +++I   + CA+ G ++D+   +  AR +A  + Y Y   MPV+ L + + D  Q YTQ   +RP G S +   +D   G  +Y +DP+G + G+K            S L++ YK ++S  ++  LA+
Sbjct:    6 SAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTH-LFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAI 197          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 70/181 (38.67%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDIS 668
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL  S+ T  ++ I  ++     GI +DA  L+  AR QA  + + Y   MPV+ L + + D  Q YTQ   +RP GV  +  G D+  G  LY  DP+G++ G K            + L++  K++ S
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTH-LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPS 188          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 70/160 (43.75%), Postives = 99/160 (61.88%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG--------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            YD     FSPEGRL+QVEYA+E      +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++ +      QFG          RPFGV+ LF G D+  G QL+  DPSG +
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTF 162          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 73/200 (36.50%), Postives = 106/200 (53.00%), Query Frame = 3
Query:  117 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQ-RYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            M+ +Y    T FSP G+L Q+EYA+ A+    +++GI + DGVVL  EKK TS+ L    S EK+  I   +    +G+  D  +L++ +R  AQ  Y   Y E  P + LVQ +    Q  TQ GG+RPFGVS L AG D+  G  LY  DPSG Y  WK            + L++ Y D++   ++   A+   ++T
Sbjct:    1 MTDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSE-LAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKET 198          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.949e-27
Identity = 64/157 (40.76%), Postives = 95/157 (60.51%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 596
            +YD+ TT +SP GRL+QVEYA EA+ N  +A+G  +KD VVL   K+  S + Q S+  EK++K+DDHV  A+AG+++D  +L    R +   Y Y +    P+  + + + +  Q + QF G RPFGV  L AG+D   G  LY + PSG+   +K
Sbjct:    5 QYDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKR--SPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDST-GPHLYHTVPSGDVFDFK 158          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 59/160 (36.88%), Postives = 97/160 (60.62%), Query Frame = 3
Query:  117 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 596
            M++RYD   TI+SP+G L QVEYA EA+    + +G+ + + +V+  EK+    L Q      K+  +DDHV    +G+ +DA IL++ A+++AQ +   +++P  VE + + +   KQ YTQ  G RPFG+S L  G+D++    L+ +DPSG +  W+
Sbjct:    1 MAQRYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDL-QEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDEDGTPHLFQTDPSGIFYEWR 159          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 64/153 (41.83%), Postives = 94/153 (61.44%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNY 584
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ S+  VVL    K  S+L   S+   K++K+DDH+  A+AG+ +D  +L    R ++  +++ Y+ P+PV +LV  L D  Q  TQ    RP+GV  L  G D++ G  LY + PSGNY
Sbjct:    5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL---SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDES-GAHLYYNCPSGNY 153          
The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA6_ORYSJ7.762e-2836.73Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA5_DROME1.324e-2736.82Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA5_CAEEL1.324e-2736.73Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA6_DROME2.949e-2734.72Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA6A_ARATH2.949e-2738.67Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA5_RAT2.949e-2743.75Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSA2_SCHPO2.949e-2736.50Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA1_TRYCR2.949e-2740.76Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA73_DROME3.852e-2736.88Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSA1B_ARATH5.031e-2741.83Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC34007F08EF PostHarvC1 Citrus clementina cDNA clone C34007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bp
AGGGAGTGTGGCCTCTAAAGGAAGATCGTATAATAGCGAAGTCACTGAGC
TTTAACGAAGGGTCGAAGAGCATTACCTTTGAGTTGGCTGACAAAGAATT
ACATTCATAACCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTT
TCTCCCCTGAAGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATT
GGAAATGCTGGTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTT
GGTTGGTGAAAAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCA
CTGAGAAGATGTACAAGATTGATGATCACGTTGCTTGTGCCGTAGCTGGA
ATAATGTCTGATGCGAACATCCTAATCAACACTGCCAGGGTCCAAGCCCA
ACGTTACACATATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTC
AATCTCTTTGTGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGC
CCGTTTGGTGTTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTT
CCAACTTTACATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTG
CTGCTATTGGTGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGAT
TACAAGGATGATATTTCAAGGGGAGAAAGCAGTTCACTAGCACTGAAAGG
TGCTCAGCAAACCA
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