FC930447

Overview
NameFC930447
Unique NameFC930447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 58/186 (31.18%), Postives = 100/186 (53.76%), Query Frame = 3
Query:  147 IFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISRGESSSLAL 695
            IFSP+G+LYQ+EYA +AI   G +++GI  KD VV+  +KK+  KL+   + T  +YK+ D++ C   GI+ D+    + A  +   + + +   +P   L + + D  Q  TQ    RP GV+ +  G D   G QL+  DP+G + G+K            + L++ +K +  +S+ E+  ++L
Sbjct:   14 IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVT-SLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSL 198          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21
Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGN 581
            YD  T  FSP GRL+QVEYA+EAI      +G+ S    VLV  K+   +L   S+  +K+ K D+H+  ++AG+  DA +L N  R Q    +  +   + VE+    LCD  Q  TQ  G RP+GV  L  G+DK+ G  L    PSGN
Sbjct:    6 YDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGN 152          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  150 FSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 593
            FSP+GRL+Q EYA +A+ NA + IGI  +DGV+L  EK VTSKLL+   +  ++  +D H+  A  G + D   ++  AR +A  +   Y  P+P   +   L +  Q +T +  +RPFGV    A +D   G  LYM +P+G Y G+
Sbjct:   14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVN-NRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGY 159          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 60/175 (34.29%), Postives = 95/175 (54.29%), Query Frame = 3
Query:  150 FSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQ-----SLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD 659
            +S EGR++Q+EYAM+A+    + IG+ +K+ V+L  EKK+ S  LQ   S  K YKI DH+    +GI  D   ++  +R     +T+ Y E + VE+L++     SL   ++   +    RPFGVS + AG+D     +LY  DPSG+Y  +K             IL+ +Y++
Sbjct:   11 YSSEGRIHQIEYAMKAMNLGTTTIGVRTKEFVILCSEKKILS-TLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTEP--RLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEE 182          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 59/161 (36.65%), Postives = 83/161 (51.55%), Query Frame = 3
Query:  117 MSRR-YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKN-----YGFQLYMSDPSG 578
            MSR  +D   T+FSPEG LYQVEYA +A+  AG   + I  KD V++  +  V  KL++  T T  +Y ++D+    + G   D   L+  AR +A  Y Y Y  PM V  L +   D  Q  TQ  G+R  G    F G ++N     +  Q+Y  DP+G
Sbjct:    1 MSRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETIT-SLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAG 160          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11
Identity = 46/165 (27.88%), Postives = 80/165 (48.48%), Query Frame = 3
Query:  213 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVE---QLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALK 698
            + +GI  KDGVV   E++ +   L    +T+K++KID+H+A  +AG ++DA  L+   + +A  Y     E + +E    L  ++  + + Y       PF V  L  G D+N G ++Y  DPSG     K             +L+  Y D++   E+  +A++
Sbjct:   11 TTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFY-------PFIVQTLLGGVDEN-GAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIR 167          
The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA6_DICDI1.418e-2131.18Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA1_YEAST1.852e-2139.74Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA3_SCHPO2.418e-2138.51Probable proteasome subunit alpha type-3 OS=Schizo... [more]
PSA5_ENCCU1.016e-1934.29Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSA1_TRYBB1.123e-1836.65Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSMB_METTH1.018e-1127.88Proteasome subunit beta OS=Methanobacterium thermo... [more]

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Properties
Property NameValue
Genbank descriptionC34007F08EF PostHarvC1 Citrus clementina cDNA clone C34007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bp
AGGGAGTGTGGCCTCTAAAGGAAGATCGTATAATAGCGAAGTCACTGAGC
TTTAACGAAGGGTCGAAGAGCATTACCTTTGAGTTGGCTGACAAAGAATT
ACATTCATAACCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTT
TCTCCCCTGAAGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATT
GGAAATGCTGGTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTT
GGTTGGTGAAAAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCA
CTGAGAAGATGTACAAGATTGATGATCACGTTGCTTGTGCCGTAGCTGGA
ATAATGTCTGATGCGAACATCCTAATCAACACTGCCAGGGTCCAAGCCCA
ACGTTACACATATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTC
AATCTCTTTGTGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGC
CCGTTTGGTGTTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTT
CCAACTTTACATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTG
CTGCTATTGGTGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGAT
TACAAGGATGATATTTCAAGGGGAGAAAGCAGTTCACTAGCACTGAAAGG
TGCTCAGCAAACCA
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