FC930447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21 Identity = 58/186 (31.18%), Postives = 100/186 (53.76%), Query Frame = 3 Query: 147 IFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISRGESSSLAL 695 IFSP+G+LYQ+EYA +AI G +++GI KD VV+ +KK+ KL+ + T +YK+ D++ C GI+ D+ + A + + + + +P L + + D Q TQ RP GV+ + G D G QL+ DP+G + G+K + L++ +K + +S+ E+ ++L Sbjct: 14 IFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVT-SLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSL 198
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.852e-21 Identity = 60/151 (39.74%), Postives = 82/151 (54.30%), Query Frame = 3 Query: 129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGN 581 YD T FSP GRL+QVEYA+EAI +G+ S VLV K+ +L S+ +K+ K D+H+ ++AG+ DA +L N R Q + + + VE+ LCD Q TQ G RP+GV L G+DK+ G L PSGN Sbjct: 6 YDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKS-GAHLLEFQPSGN 152
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21 Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 3 Query: 150 FSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW 593 FSP+GRL+Q EYA +A+ NA + IGI +DGV+L EK VTSKLL+ + ++ +D H+ A G + D ++ AR +A + Y P+P + L + Q +T + +RPFGV A +D G LYM +P+G Y G+ Sbjct: 14 FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVN-NRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGY 159
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19 Identity = 60/175 (34.29%), Postives = 95/175 (54.29%), Query Frame = 3 Query: 150 FSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQ-----SLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD 659 +S EGR++Q+EYAM+A+ + IG+ +K+ V+L EKK+ S LQ S K YKI DH+ +GI D ++ +R +T+ Y E + VE+L++ SL ++ + RPFGVS + AG+D +LY DPSG+Y +K IL+ +Y++ Sbjct: 11 YSSEGRIHQIEYAMKAMNLGTTTIGVRTKEFVILCSEKKILS-TLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTEP--RLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEE 182
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18 Identity = 59/161 (36.65%), Postives = 83/161 (51.55%), Query Frame = 3 Query: 117 MSRR-YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKN-----YGFQLYMSDPSG 578 MSR +D T+FSPEG LYQVEYA +A+ AG + I KD V++ + V KL++ T T +Y ++D+ + G D L+ AR +A Y Y Y PM V L + D Q TQ G+R G F G ++N + Q+Y DP+G Sbjct: 1 MSRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETIT-SLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAG 160
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.018e-11 Identity = 46/165 (27.88%), Postives = 80/165 (48.48%), Query Frame = 3 Query: 213 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVE---QLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALK 698 + +GI KDGVV E++ + L +T+K++KID+H+A +AG ++DA L+ + +A Y E + +E L ++ + + Y PF V L G D+N G ++Y DPSG K +L+ Y D++ E+ +A++ Sbjct: 11 TTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFY-------PFIVQTLLGGVDEN-GAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIR 167 The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bpback to top |