FC930447

Overview
NameFC930447
Unique NameFC930447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.182e-40
Identity = 85/195 (43.59%), Postives = 123/195 (63.08%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y +D++  E   LAL    +T
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 84/195 (43.08%), Postives = 123/195 (63.08%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y ++++  E   LAL    +T
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 85/195 (43.59%), Postives = 123/195 (63.08%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ ARV+AQ    +Y E + VE L + +CD KQ YT  GG RPFG++ L  G D+ +  +L+ +DPSG    +K             IL++ Y +++S  E   LA+    +T
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 84/195 (43.08%), Postives = 123/195 (63.08%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y ++++  E   LAL    +T
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 85/195 (43.59%), Postives = 121/195 (62.05%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++  ++  LALK    T
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSAT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 85/195 (43.59%), Postives = 121/195 (62.05%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++  ++  LALK    T
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSAT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 85/195 (43.59%), Postives = 121/195 (62.05%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++  ++  LALK    T
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSAT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 85/195 (43.59%), Postives = 121/195 (62.05%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++  ++  LALK    T
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSAT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 85/195 (43.59%), Postives = 121/195 (62.05%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++  ++  LALK    T
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSAT 202
[Close]
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 85/195 (43.59%), Postives = 121/195 (62.05%), Query Frame = 3 
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK GVV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +LYM++PSG Y  ++              L+++YK+D++  ++  LALK    T
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKALSAT 202
The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_METM55.182e-4043.59Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METMP1.508e-3943.08Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METVS2.572e-3943.59Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METM72.572e-3943.08Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULIY1.276e-3843.59Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN1.276e-3843.59Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM1.276e-3843.59Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL1.276e-3843.59Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK1.276e-3843.59Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA1.276e-3843.59Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionC34007F08EF PostHarvC1 Citrus clementina cDNA clone C34007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bp
AGGGAGTGTGGCCTCTAAAGGAAGATCGTATAATAGCGAAGTCACTGAGC
TTTAACGAAGGGTCGAAGAGCATTACCTTTGAGTTGGCTGACAAAGAATT
ACATTCATAACCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTT
TCTCCCCTGAAGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATT
GGAAATGCTGGTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTT
GGTTGGTGAAAAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCA
CTGAGAAGATGTACAAGATTGATGATCACGTTGCTTGTGCCGTAGCTGGA
ATAATGTCTGATGCGAACATCCTAATCAACACTGCCAGGGTCCAAGCCCA
ACGTTACACATATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTC
AATCTCTTTGTGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGC
CCGTTTGGTGTTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTT
CCAACTTTACATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTG
CTGCTATTGGTGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGAT
TACAAGGATGATATTTCAAGGGGAGAAAGCAGTTCACTAGCACTGAAAGG
TGCTCAGCAAACCA
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