FC930447

Overview
NameFC930447
Unique NameFC930447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 83/195 (42.56%), Postives = 121/195 (62.05%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSPEGRLYQVEYA EA+    +A+GI   DGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y +++   E   LAL    +T
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKT 202          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 84/195 (43.08%), Postives = 120/195 (61.54%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALKGAQQT 713
            YD   TIFSP+G LYQV+YA EA+    +AIGI SK  VV+  EK+    LL    S EK++ IDDHV C+ AG+ SD  +LI+ AR  A ++   Y EP+ ++ L +S+ D KQ YTQ GG+RPFGV+ + AG DK+   +L+M++PSG Y  ++              L+++YK+D++  E+  LALK    T
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVD-SIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVP-KLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKALSAT 202          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.147e-37
Identity = 83/195 (42.56%), Postives = 123/195 (63.08%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSL---ALKGA 704
            YD   T+FSP+GRL+QVEYA EA+    +A+GI  KDGV L+ EKKV S+L++  TS EK+  IDD VA   +G+++DA +LI+ AR+  Q+    Y   M +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D + G +L+  DP+G    +K            + L+++YK+++S  E+  +   ALK A
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVE-KTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLD-SIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSA 200          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 75/180 (41.67%), Postives = 120/180 (66.67%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDIS 668
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++ID+H+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMN 184          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 80/192 (41.67%), Postives = 117/192 (60.94%), Query Frame = 3
Query:  126 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALK 698
            RYD   T+FSP+G L+QVEYAMEA+    +A+G+   D VVL  EKK T KL Q S S  K+  +DDH+A A AG+ +DA +L+N AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D + G   LY +DPSG +  WK              L+++YK + S  E+  LA++
Sbjct:    3 RYDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNYK-ETSGQETVKLAIR 192          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.560e-36
Identity = 75/180 (41.67%), Postives = 119/180 (66.11%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDIS 668
            YD   T+FSP+GRL+QVEYA EA+    +A+GI + DGVVL+ +K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y EP+ VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + +Y+ D++
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNLP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQDMN 186          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.560e-36
Identity = 80/196 (40.82%), Postives = 114/196 (58.16%), Query Frame = 3
Query:  111 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALK 698
            P     YD   TIFSPEG LYQV YA EA+    +++GI + +GVV+  EK+    L+      +K+YKIDDH+  A AG+  D  ILI+ ARV   R+   Y EP PVE + + + D KQ YTQ GG+RPFGV+ +FAG + +   ++Y +DP G Y  +K             + ++ Y+ D+S  E++ LALK
Sbjct:    6 PPHQTAYDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDID-DIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALK 200          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 81/196 (41.33%), Postives = 119/196 (60.71%), Query Frame = 3
Query:  111 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALK 698
            P+    YD   T+FSP+GRLYQVEYA EA+    +A+GI   DG+VL+ +K+V SKLL+ S S EK++KID+H+  A +G++ DA  L++ ARV++Q    +Y E + VE L + LCD  Q YTQFGG RP+G + L AG      F+L+ +DPSG    +K             + +++Y  + S  ++  L LK
Sbjct:    3 PQYQMGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPS-SIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDGQ-FRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEYNPEASIRDAILLGLK 196          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 77/190 (40.53%), Postives = 123/190 (64.74%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALK 698
            YD   T+FSP+GRL+QVEYA EA+    +A+G+   +GV+L+ +KK+ SKL++ + S EK+  IDD+VA   +G+++DA +LI+ AR+ AQ+    Y   + +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D+  G +L+  DP+G    +K            S L+++YK+ +S  E+ +L +K
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQN-SLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIK 195          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 78/195 (40.00%), Postives = 121/195 (62.05%), Query Frame = 3
Query:  111 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            P  S  YD   T+FSP+GRL+QVEYA EA+    +++G+ SK+G+VLV +K+ TSKL++   S EK+++ID+H+  A +G+++DA  +I  AR++AQ     Y EP+ VE L + +CD KQ YTQ GG+RPFG + +  G +   G +L+ +DPSG    +K               ++ Y DD++  ++  LAL
Sbjct:    3 PLQSAGYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPK-SIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVN-GRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELAL 195          
The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_METM62.177e-3842.56Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULSO8.273e-3843.08Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_PICTO9.147e-3742.56Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_METAC1.195e-3641.67Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSA7_SOLLC1.195e-3641.67Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSMA_METBF1.560e-3641.67Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_AERPE1.560e-3640.82Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSMA_METPE2.038e-3641.33Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_THEVO2.661e-3640.53Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_METTH2.661e-3640.00Proteasome subunit alpha OS=Methanobacterium therm... [more]

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Properties
Property NameValue
Genbank descriptionC34007F08EF PostHarvC1 Citrus clementina cDNA clone C34007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bp
AGGGAGTGTGGCCTCTAAAGGAAGATCGTATAATAGCGAAGTCACTGAGC
TTTAACGAAGGGTCGAAGAGCATTACCTTTGAGTTGGCTGACAAAGAATT
ACATTCATAACCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTT
TCTCCCCTGAAGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATT
GGAAATGCTGGTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTT
GGTTGGTGAAAAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCA
CTGAGAAGATGTACAAGATTGATGATCACGTTGCTTGTGCCGTAGCTGGA
ATAATGTCTGATGCGAACATCCTAATCAACACTGCCAGGGTCCAAGCCCA
ACGTTACACATATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTC
AATCTCTTTGTGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGC
CCGTTTGGTGTTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTT
CCAACTTTACATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTG
CTGCTATTGGTGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGAT
TACAAGGATGATATTTCAAGGGGAGAAAGCAGTTCACTAGCACTGAAAGG
TGCTCAGCAAACCA
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