FC930447

Overview
NameFC930447
Unique NameFC930447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.194e-32
Identity = 73/189 (38.62%), Postives = 108/189 (57.14%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            YD   T+FSP+G L+QVEYA EAI    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++ + VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+    +  ++ L
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKL 190          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 72/189 (38.10%), Postives = 108/189 (57.14%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            YD   T+FSP+G L+QVEYA EA+    +A+G+  K+ VVL  EKK  +KL Q   +  K+  +D++V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L++ Y D+    +  ++ L
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKL-QDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKL 190          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 72/189 (38.10%), Postives = 108/189 (57.14%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            YD   T+FSP+G L+QVEYA EA+    +A+G+  K+ VVL  EKK  +KL Q   +  K+  +D++V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L++ Y D+    +  ++ L
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKL-QDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKL 190          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  123 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+   ++   A+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAI 192          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  123 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+   ++   A+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAI 192          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  123 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+   ++   A+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAI 192          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  123 RRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            R Y    T FSP G+L Q+EYA+ A+     ++GI + +GVVL  EKK  S +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK            + L++ Y +D+   ++   A+
Sbjct:    4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKS-ILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAI 192          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.511e-31
Identity = 72/192 (37.50%), Postives = 106/192 (55.21%), Query Frame = 3
Query:  120 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            + RY    T FSP G+L Q+EYA+ A+     ++GI++ +GVV+  E K  S L +   S  ++  I +H+    +G+  D  +L+  AR  AQ Y   Y+EP+PV QLVQ +    Q YTQ GG+RPFGVS L  GWD +  + LY SDPSG Y  WK            + L++ Y +D+   ++   A+
Sbjct:    3 TERYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQH-SVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPY-LYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAI 192          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.397e-31
Identity = 73/190 (38.42%), Postives = 110/190 (57.89%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLALK 698
            YD  T++FSP+GR+YQVEYA EA+      +G+ + DGVVL   +   S+L++   S EK++K+DD +  A AG ++DA  L++ AR  AQR    Y EP+ VE L +++ D  Q  TQ GG RP+G S L  G +   G +L+ +DPSG    WK            + L+  Y +D+S  +  +LA++
Sbjct:    9 YDRGTSLFSPDGRIYQVEYAREAVKRGAPVLGVRTADGVVLAALRSTPSELMEAE-SIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITDNIQESTQSGGTRPYGASLLIGGVENGSG-RLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVE 196          
BLAST of FC930447 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.397e-31
Identity = 74/195 (37.95%), Postives = 109/195 (55.90%), Query Frame = 3
Query:  129 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACA------VAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISRGESSSLAL 695
            YD   T+FSP+G L+QVEYA EA+    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A      V+G+ +DA I+IN ARV+ Q +     +P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y DD    +  ++ L
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKL 196          
The following BLAST results are available for this feature:
BLAST of FC930447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA7_PONAB5.194e-3238.62Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA7B_XENLA8.860e-3238.10Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA8.860e-3238.10Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA2_RAT8.860e-3238.22Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE8.860e-3238.22Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN8.860e-3238.22Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN8.860e-3238.22Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA2_DROME1.511e-3137.50Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSMA2_HALVO4.397e-3138.42Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA7_RAT4.397e-3137.95Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC34007F08EF PostHarvC1 Citrus clementina cDNA clone C34007F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930447 ID=FC930447; Name=FC930447; organism=Citrus clementina; type=EST; length=714bp
AGGGAGTGTGGCCTCTAAAGGAAGATCGTATAATAGCGAAGTCACTGAGC
TTTAACGAAGGGTCGAAGAGCATTACCTTTGAGTTGGCTGACAAAGAATT
ACATTCATAACCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTT
TCTCCCCTGAAGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATT
GGAAATGCTGGTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTT
GGTTGGTGAAAAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCA
CTGAGAAGATGTACAAGATTGATGATCACGTTGCTTGTGCCGTAGCTGGA
ATAATGTCTGATGCGAACATCCTAATCAACACTGCCAGGGTCCAAGCCCA
ACGTTACACATATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTC
AATCTCTTTGTGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGC
CCGTTTGGTGTTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTT
CCAACTTTACATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTG
CTGCTATTGGTGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGAT
TACAAGGATGATATTTCAAGGGGAGAAAGCAGTTCACTAGCACTGAAAGG
TGCTCAGCAAACCA
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