FC930451

Overview
NameFC930451
Unique NameFC930451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 1
Query:  328 EHDYRFRVFKANLRRAKRRQLLDPTAVH--GVTKFSDLTPSEFRRQFLGLN----RRLRLPADAQK--APILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCD 702
            + D RF +FK NLR        +  A +  G+T F++LT  E+R  +LG      RR+    +     +  +  +++P   DWR  GAV  +KDQG CGSCW+FS   A+EG + + TGELVSLSEQ+LVDCD
Sbjct:   24 QQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCD 156          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.498e-21
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  247 SEDHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPA---DAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCD 702
            S+D L + E    LF S   K +K Y + +E  YRF +F+ NL         + +   G+  F+DL+  EF+++++G            D +        + P   DWR  GAVT VK+QGACGSCW+FS    +EG + + TG L+ LSEQ+LVDCD
Sbjct:   34 SQDDLTSIERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCD 191          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.498e-21
Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  259 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPI-LPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCDH 705
            LL A  +F  F + ++K Y    E + RF +F+  L     +  L+ +AV+ + KF+DL+ +E   ++ GLN  ++     +   I  P    P +FDWR    VT +K+Q ACG+CW+F+   ++E  + +     + LSEQQ++DCD+
Sbjct:   24 LLKAGDYFETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKGPLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCDY 173          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.498e-21
Identity = 60/153 (39.22%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  271 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCDHE 708
            +HH++L+K  +SK Y  + E   R  +++ NL+      L     +H    G+    D+T  E     + L   LR+P+  Q+     +N    LP   DWR+ G VT VK QG+CG+CW+FSA GALE    L TG+LVSLS Q LVDC  E
Sbjct:   25 DHHWNLWKKTYSKQYKEENEEVARRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTGEEV----ISLMGSLRVPSQWQRNVTYRSNSNQKLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 173          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 58/132 (43.94%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  328 EHDYRFRVFKANLR--RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAP-----ILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCD 702
            E   RF  FK+N     +  ++   P  +H + +F D+  +EFR  F+G  RR   P+     P      L  +DLP   DWR  GAVTGVKDQG CGSCW+FS   ++EG + + TG LVSLSEQ+L+DCD
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLH-LNRFGDMDQAEFRATFVGDLRR-DTPSKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 190          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.556e-21
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 1
Query:  280 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            F+ F  ++ K+Y +  E   RFR+F  +L+  +       +   G+ +F+D++  EFR   LG  +                  LP   DWR+ G V+ VK+QG CGSCW+FS TGALE A+  +TG+ +SLSEQQLVDC
Sbjct:   59 FARFAVRYGKSYESAAEVHKRFRIFSESLQLVRSTNRKGLSYRLGINRFADMSWEEFRATRLGAAQNCSATLTGNHRMRAAAVALPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALEAAYTQATGKPISLSEQQLVDC 198          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  271 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPIL---PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            +HH+ L+K  + K Y  + E   R  +++ NL+      L     +H    G+    D+T  E     + L   LR+P+   +       P   LP   DWR+ G VT VK QGACGSCW+FSA GALE    L TG+LVSLS Q LVDC
Sbjct:   25 DHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEV----ISLMSSLRVPSQWPRNVTYKSDPNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC 170          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 60/151 (39.74%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  259 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRA----KRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            L  A   +  FK+++ + Y   +E  YR RVF+ N +      K+ +  + T    + +F D+T  EF     G  +  R   + +         +  D DWR    VT VKDQ  CGSCW+FSATGALEG H L   ELVSLSEQQLVDC
Sbjct:   13 LATASPSWDHFKTQYGRKYGDAKEELYRQRVFQQNEQLIEDFNKKFENGEVTFKVAMNQFGDMTNEEFNAVMKGYKKGSR--GEPKAVFTAEAGPMAADVDWRTKALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDC 161          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 53/157 (33.76%), Postives = 86/157 (54.78%), Query Frame = 1
Query:  265 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGL-NRRLRL----------PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCD 702
            +A  +F  F ++++K Y +++E  YR+ +F+ N+    ++   + +AV+ + +F+D+  +E   +  GL +  L L          PA  Q+         P  FDWR    +T VKDQG CG+CW F++ GALE  + +    L+ LSEQQLVDCD
Sbjct:   35 SAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASGELGLNFCETIVVDGPAQRQR---------PVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCD 182          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  259 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ---KAPIL--PTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCD 702
            LL A ++F  F  +F+K Y ++ E   RF++F+ NL     +   D +A + + KFSDL+  E   ++ GL+    LP   Q   K  +L  P    P +FDWR    VT VK+QG CG+CW+F+   +LE    +   +L++LSEQQ++DCD
Sbjct:   21 LLKAPNYFEEFVHRFNKDYGSEVEKLRRFKIFQHNLNEIINKNQND-SAKYEINKFSDLSKDETIAKYTGLS----LPIQTQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCD 168          
The following BLAST results are available for this feature:
BLAST of FC930451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
CYSP4_BRANA1.147e-2142.11Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
PAPA2_CARPA1.498e-2137.34Chymopapain OS=Carica papaya PE=1 SV=2[more]
CATV_NPVBS1.498e-2132.67Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATS_CANFA1.498e-2139.22Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CYSP2_HORVU1.957e-2143.94Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CYSP2_MAIZE2.556e-2138.57Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATS_BOVIN3.338e-2139.33Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CYSP3_HOMAM4.360e-2139.74Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATV_NPVSE4.360e-2133.76Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVAC4.360e-2137.25Viral cathepsin OS=Autographa californica nuclear ... [more]

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Properties
Property NameValue
Genbank descriptionC34007F12EF PostHarvC1 Citrus clementina cDNA clone C34007F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930451 ID=FC930451; Name=FC930451; organism=Citrus clementina; type=EST; length=732bp
GAATGAGGAGAAATTAGGTGTCGAAATCTCATAAGCGGACCCAACCACAA
GTTTCTTCTGTCTTTTTGGAAACATTTCTTATCTGCTTCATCCTTCTTCG
CAGTCCACTGAAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTC
CTCCTCCTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGG
CGACGATGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCG
AAGATCATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAA
TTCTCCAAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGT
GTTCAAGGCTAACCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCA
CTGCTGTCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCCGAATTC
CGCCGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGC
TCAAAAGGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACT
GGCGTGATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGA
TCGTGCTGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACCTCTT
ATCGACGGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTG
ATCACGAGTGTGATCCAGAAGAATCTGGTTCA
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