FC930451

Overview
NameFC930451
Unique NameFC930451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  277 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            HF  +  +  K Y++ EE+ +R + F +NLR        + T   G+ +FSD++  E +R++L    +      A K+  L  T   P   DWR  G  VT VK+QG+CGSCW+FS TGALE A  ++TG+L  L+EQQLVDC
Sbjct:   34 HFQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQ---NCSATKSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDC 172          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  280 FSLFKSKFSKTYATQEEHDYRFRVFKANL---RRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            F+ F  +  K Y    E   RFR+F  +L   R   RR L  P  + G+ +F+D++  EF+   LG  +       A    +     LP   DWR+ G V+ VKDQG CGSCW+FS TG+LE A+  +TG+ VSLSEQQLVDC
Sbjct:   62 FARFAVRHGKRYGDAAEVQRRFRIFSESLELVRSTNRRGL--PYRL-GINRFADMSWEEFQASRLGAAQNCSATL-AGNHRMRDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDC 200          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 59/153 (38.56%), Postives = 82/153 (53.59%), Query Frame = 1
Query:  253 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            +H L A+  ++ +K+  ++ Y   EE  +R  V++ N++  +          H  T     F D+T  EFR+   G   R        + P+    + P   DWR+ G VT VK+QG CGSCW+FSATGALEG     TG+LVSLSEQ LVDC
Sbjct:   22 NHSLEAQ--WTKWKAMHNRLYGMNEE-GWRRAVWEKNMKMIELHNQEYSQGKHSFTMAMNTFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF--YEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC 169          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 56/131 (42.75%), Postives = 74/131 (56.49%), Query Frame = 1
Query:  328 EHDYRFRVFKANLR-------RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            EH+ RF VF  NL+       RA  R         G+ +F+DLT  EFR  FLG     R  A  ++       +LP   DWR+ GAV  VK+QG CGSCW+FSA   +E  + L TGE+++LSEQ+LV+C
Sbjct:   70 EHERRFLVFWDNLKFVDAHNARADERGGFRL----GMNRFADLTNEEFRATFLGAKVAERSRAAGERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVEC 196          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 1
Query:  277 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            HF  +  +  K Y+ +E H +R +VF +N R+       + T   G+ +FSD++  E R ++L    +      A K   L  T   P   DWR  G  V+ VK+QG+CGSCW+FS TGALE A  ++TG+++SL+EQQLVDC
Sbjct:   34 HFKSWMVQHQKKYSLEEYH-HRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQ---NCSATKGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDC 172          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 58/149 (38.93%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  265 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHG----VTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            N + H+  +K+   + Y   EE ++R  V++ N +             HG    +  F D+T  EFR+   G   +          P+L   D+P   DW   G VT VK+QG CGSCW+FSATGALEG     TG+LVSLSEQ LVDC
Sbjct:   24 NLDAHWHQWKATHRRLYGMNEE-EWRRAVWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKLFHEPLLV--DVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC 169          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 58/149 (38.93%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  265 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHG----VTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            N + H+  +K+   + Y   EE ++R  V++ N +             HG    +  F D+T  EFR+   G   +          P+L   D+P   DW   G VT VK+QG CGSCW+FSATGALEG     TG+LVSLSEQ LVDC
Sbjct:   24 NLDAHWHQWKATHRRLYGMNEE-EWRRAVWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKLFHEPLLV--DVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC 169          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 54/140 (38.57%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  280 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            F+ F  ++ K+Y +  E   RFR+F  +L   +           G+ +FSD++  EF+   LG  +       A    +     LP   DWR+ G V+ VK+Q  CGSCW+FS TGALE A+  +TG+ +SLSEQQLVDC
Sbjct:   61 FARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATL-AGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDC 199          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  298 KFSKTYATQEEHDYRFRVFKANLRRAKRRQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            K+ K+Y +  E + RF +FK  LR         + +   G+ +F+DLT  EFR  +LG          + +        LP+  DWR  GAV  +K QG CG CW+FSA   +EG + + TG L+SLSEQ+L+DC
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLGFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDC 182          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-19
Identity = 60/132 (45.45%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  328 EHDYRFRVFKANLR-------RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTG-VKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            EH+ RFRVF  NL+       RA  R         G+ +F+DLT  EFR  +LG     R     +         LP   DWRD GAV   VK+QG CGSCW+FSA  A+EG + + TGELVSLSEQ+LV+C
Sbjct:   84 EHERRFRVFWDNLKFVDAHNARADERGGFRL----GMNRFADLTNGEFRATYLGTTPAGRGRRVGEAYRHDGVEALPDSVDWRDKGAVVAPVKNQGQCGSCWAFSAVAAVEGINKIVTGELVSLSEQELVEC 211          
The following BLAST results are available for this feature:
BLAST of FC930451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
CATH_BOVIN6.296e-2040.56Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
ORYC_ORYSJ8.222e-2041.96Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATL1_CERAE8.222e-2038.56Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
ORYB_ORYSJ1.074e-1942.75Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CATH_PIG1.074e-1939.86Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATL2_BOVIN1.403e-1938.93Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CATL1_BOVIN1.403e-1938.93Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
ALEU_HORVU1.832e-1938.57Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
ACTN_ACTDE1.832e-1937.78Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
CYSP1_ORYSJ2.392e-1945.45Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]

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Properties
Property NameValue
Genbank descriptionC34007F12EF PostHarvC1 Citrus clementina cDNA clone C34007F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930451 ID=FC930451; Name=FC930451; organism=Citrus clementina; type=EST; length=732bp
GAATGAGGAGAAATTAGGTGTCGAAATCTCATAAGCGGACCCAACCACAA
GTTTCTTCTGTCTTTTTGGAAACATTTCTTATCTGCTTCATCCTTCTTCG
CAGTCCACTGAAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTC
CTCCTCCTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGG
CGACGATGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCG
AAGATCATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAA
TTCTCCAAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGT
GTTCAAGGCTAACCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCA
CTGCTGTCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCCGAATTC
CGCCGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGC
TCAAAAGGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACT
GGCGTGATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGA
TCGTGCTGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACCTCTT
ATCGACGGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTG
ATCACGAGTGTGATCCAGAAGAATCTGGTTCA
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