FC930451

Overview
NameFC930451
Unique NameFC930451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 54/130 (41.54%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  328 EHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLN-RRLRL----PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCD 702
            E   RF VFK N         +D      + KF+D+T  EFR  + G   +  R+    P           + +P   DWR  GAVT VKDQG CGSCW+FS   A+EG + + T +LVSLSEQ+LVDCD
Sbjct:   53 EKQKRFNVFKHNAMHVHNANKMDKPYKLKLNKFADMTNHEFRNTYSGSKVKHHRMFRGGPRGNGTFMYEKVDTVPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCD 182          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1
Query:  280 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRL-RLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCDHE 708
            F  +  K  K Y +  E + R  +F+ NLR    R   + +   G+ +F+DL+  E+     G + R  R       +    T+D   LP   DWR+ GAVT VKDQG C SCW+FS  GA+EG + + TGELV+LSEQ L++C+ E
Sbjct:   56 FESWMVKHGKVYDSVAEKERRLTIFEDNLRFITNRNAENLSYRLGLNRFADLSLHEYGEICHGADPRPPRNHVFMTSSNRYKTSDGDVLPKSVDWRNEGAVTEVKDQGLCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKE 202          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:  271 EHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCDHE 708
            ++H+ L+K    K Y  + E + R  +++ NL+      L     +H    G+    D+T  E   + +G  R  R               LP   DWR+ G VT VK QG+CG+CW+FSA GALEG   L TG+L+SLS Q LVDC +E
Sbjct:   33 DYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCR-MGALRISRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNE 181          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 54/143 (37.76%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  277 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHG-AVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            HF  +  +  KTY++ E +++R ++F  N R+ +     + T    + +FSD++ +E + +FL    +      A K+  L  T   P+  DWR  G  V+ VK+QGAC SCW+FS TGALE A  +++G+++SL+EQQLVDC
Sbjct:   32 HFKSWMKQHQKTYSSVE-YNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQ---NCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDC 170          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  424 FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            F D+T  EFR+   G   +        +  +LP  ++PT  DWR+ G +T VKDQG CGSCW+FSATGALEG     TG+L+SL+EQ LVDC
Sbjct:   23 FGDMTNEEFRQVMNGFQYQKHRKGKQFQERLLP--EIPTSVDWREKGYMTPVKDQGQCGSCWAFSATGALEGQMFWKTGKLISLNEQNLVDC 112          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 57/150 (38.00%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  265 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHG----VTKFSDLTPSEFRRQFLGL-NRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            N +  +  +K+   + Y   EE  +R  V++ N++  +          HG    +  F D+T  EFR+   G  N++ +      ++ +L   ++P   DWR+ G VT VK+QG CGSCW+FSATGALEG     TG+LVSLSEQ LVDC
Sbjct:   24 NLDADWYKWKATHGRLYGMNEE-GWRRAVWEKNMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHKKGKVFHESLVL---EVPKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC 169          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 1
Query:  298 KFSKTYATQEEHDYRFRVFKANLRRAKRRQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            K+ K+Y +  E + RF +FK  LR         + +   G+ +F+DLT  EFR  +L           + +        LP+  DWR  GAV  +K QG CG CW+FSA   +EG + + TG L+SLSEQ+L+DC
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLRFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDC 182          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  304 SKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTN----DLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            +K Y T +E   R+  FK N+             V G+ + +DL+  E+R  +LG    ++L    ++   L  N      P + DWR+  AVT VKDQG CGSC+SFS TG++EG   + TG+LVSLSEQ ++DC
Sbjct:   42 NKAY-THKEFMPRYEEFKKNMDYVHNWNSKGSKTVLGLNQHADLSNEEYRLNYLGTRAHIKLNGYHKRNLGLRLNRPQFKQPLNVDWREKDAVTPVKDQGQCGSCYSFSTTGSVEGVTAIKTGKLVSLSEQNILDC 176          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 60/150 (40.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  265 NAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRL-PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDC 699
            N +  +  +K+   + Y   EE  +R  V++ N++  +          HG T     F D+T  EFR Q +G  R  +       + P+    DLP   DWR  G VT VK+Q  CGSCW+FSATGALEG     TG+LVSLSEQ LVDC
Sbjct:   24 NLDTKWYQWKATHRRLYGANEE-GWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFL--DLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDC 169          
BLAST of FC930451 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.005e-17
Identity = 51/157 (32.48%), Postives = 79/157 (50.32%), Query Frame = 1
Query:  259 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADA---QKAPILPTND-----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHLLSTGELVSLSEQQLVDCDH 705
            L N++  F  F  K++KTY + EE   +   FK NL+    + +    AV  + ++SDL  +   R+  G    L+    A    +  ++   D     LP   DWRD   VT VK+Q  CGSCW+FS    +E  + +   + ++LSEQ LV+CD+
Sbjct:   25 LNNSDELFKNFAIKYNKTYVSDEERAIKLENFKNNLKMINEKNMASKYAVFDINEYSDLNKNALLRRTTGFRLGLKKNPSAFTMTECSVVVIKDEPQALLPETLDWRDKHGVTPVKNQMECGSCWAFSTIANIESLYNIKYDKALNLSEQHLVNCDN 181          
The following BLAST results are available for this feature:
BLAST of FC930451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
CYSEP_RICCO3.124e-1941.54Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CPR4_ARATH4.081e-1938.78Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CATS_MOUSE5.330e-1936.67Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATH_MOUSE5.330e-1937.76Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATL6_HUMAN6.961e-1950.00Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CATL1_PIG6.961e-1938.00Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
ACTN_ACTCH1.551e-1837.04Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CYSP3_DICDI2.025e-1838.97Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATL2_HUMAN3.455e-1840.00Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATV_GVCP1.005e-1732.48Viral cathepsin OS=Cydia pomonella granulosis viru... [more]

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Properties
Property NameValue
Genbank descriptionC34007F12EF PostHarvC1 Citrus clementina cDNA clone C34007F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930451 ID=FC930451; Name=FC930451; organism=Citrus clementina; type=EST; length=732bp
GAATGAGGAGAAATTAGGTGTCGAAATCTCATAAGCGGACCCAACCACAA
GTTTCTTCTGTCTTTTTGGAAACATTTCTTATCTGCTTCATCCTTCTTCG
CAGTCCACTGAAACAAATCAAAAATGGACCGCCGTATTCTCTCCTCTCTC
CTCCTCCTCCTCCTATCTGCTGTGCTTGCGTCCGCCGTAGCTGTCAGCGG
CGACGATGCTATGATCAGACAGGTCGTGCCATCAGACGGCGAACAATCCG
AAGATCATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAA
TTCTCCAAGACTTACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGT
GTTCAAGGCTAACCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCA
CTGCTGTCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCCGAATTC
CGCCGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGC
TCAAAAGGCTCCTATCCTCCCTACCAACGATCTTCCTACTGACTTTGACT
GGCGTGATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGA
TCGTGCTGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACCTCTT
ATCGACGGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTG
ATCACGAGTGTGATCCAGAAGAATCTGGTTCA
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