FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_METFK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/165 (35.76%), Postives = 92/165 (55.76%), Query Frame = 1 
Query:  157 VVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQD----EGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +V+LDG+G  +    N I +A+TP +D F    P    L+ A  + VGLP    MGNSEVGH  +GAGR+  Q  + ++ A+AS + + +    E  N  K   +   +H++GLLSDGGVHS  D +   ++ A   G +++ +H   DGRD    S+  ++E +
Sbjct:    8 LVILDGFGYREDSHDNAIALANTPNIDRFWTQYPHT--LINASETFVGLP-RGQMGNSEVGHLNIGAGRVVFQDFERINQAIASREFFSNPVLIEAVNKAKAGHKA--VHILGLLSDGGVHSHQDHIHATIEMAVNAGVEKVYVHAFLDGRDTPPISAKPYLEKL 167
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain K12) GN=gpmI PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6 GN=gpmI PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ECOK1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O1:K1 / APEC GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ECOHS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O9:H4 (strain HS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ECO57 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O157:H7 GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_ECO24 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRD 600
            + +V+LDG+G  +  + N I  A TP MD+   + P    L+ A G  VGLP +  MGNSEVGH  LGAGRI  Q    +D+ +     + +          +     +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD
Sbjct:    8 MVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHT--LIDASGLEVGLP-DRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRD 156
[Close]
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_DINSH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Dinoroseobacter shibae (strain DFL 12) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 60/165 (36.36%), Postives = 83/165 (50.30%), Query Frame = 1 
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFET--GTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG       N   +ADTP MD    + P     +   G  VGLP+   MGNSEVGH  +GAGR+ A     +DLA+  G   ++          ++  GT HL+G+ SDGGVH   D +    K  +  G   + LH +TDGRDV   S+  F+  +
Sbjct:    7 VVLCILDGWGLDPDGPANAPLLADTPVMDRLMATCPNA--TLTTFGPDVGLPS-GQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFARNPALTGFIDRLKSSGGTAHLMGVASDGGVHGHTDHIIAAAKAVAGAGVP-VVLHAITDGRDVAPKSADRFMPAL 167
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
GPMI_METFK6.442e-2035.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLI6.442e-2038.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLC6.442e-2038.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL66.442e-2038.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL56.442e-2038.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOK16.442e-2038.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOHS6.442e-2038.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECO576.442e-2038.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECO246.442e-2038.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DINSH6.442e-2036.362,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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