FC930463

Overview
NameFC930463
Unique NameFC930463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCA_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Neurospora crassa GN=8D4.130 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.609e-57
Identity = 111/190 (58.42%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  131 RLSSSAAPAAHSRNYGSSAAASHPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +L    +  A+S N  S  AA+   + ++ +T+V+ QG TGK GTFH +QAIEYGT +VGG  PKK G  HL  PVF++V+EA  ET A A+ I+VPPP             + L VCITEGIPQHDMVR+ + L  QSKTRL+GPNCPGII PG+CKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT
Sbjct:   13 KLVQQLSKRAYSSN-SSPYAATINNLKINGDTKVLFQGFTGKQGTFHAQQAIEYGTNVVGGTNPKKAGQTHLDRPVFSNVSEAVKETGATATAIFVPPPLAAAGIEEALQAEIPLAVCITEGIPQHDMVRITSMLKTQSKTRLVGPNCPGIIAPGQCKIGIMPGFIHKRGRIGIVSRSGTLTYEAVNQTT 201          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_PSEAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Pseudomonas aeruginosa GN=sucD PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 7.861e-57
Identity = 110/166 (66.27%), Postives = 125/166 (75.30%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +V ++K+T+VICQG TG  GTFH+EQAI YGTKMVGGVTP KGGT HLGLPVFN+V EA   T A ASVIYVP PF            + L+VCITEGIP  DM+  K   + +   RLIGPNCPG+I PGECKIGIMPG+IH PG+VGIVSRSGTLTYEAV QTT
Sbjct:    2 SVLINKDTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVKEAVEATGAEASVIYVPAPFCKDSILEAAFGGIKLIVCITEGIPTLDMLDAKVKCD-ELGVRLIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCA_CAEEL (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.135e-55
Identity = 106/163 (65.03%), Postives = 126/163 (77.30%), Query Frame = 2
Query:  212 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            ++K+T+VI QG TGK GTFH +Q +EY TK+VGGV   K GTEHLGLPVF +V+EA+ +T A+ASVIYVP               + LVVCITEGIPQHDMVRVK+ L +Q+KTRL+GPNCPGII   +CKIGIMPG+IHK G +GIVSRSGTLTYEAV QTT
Sbjct:   30 INKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTT 192          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_BACSU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Bacillus subtilis GN=sucD PE=1 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 4.314e-55
Identity = 109/164 (66.46%), Postives = 124/164 (75.61%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 694
            +VF++K+TRVI QGITG    FHT+Q +EYGT +VGGVTP KGGTE  G+PVFN+VAEA   T ANASVIYVP PF            LDLV+CITE IP  DMV+VK  +  + KTRLIGPNCPG+I P ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q
Sbjct:    2 SVFINKDTRVIVQGITGSTALFHTKQMLEYGTNIVGGVTPGKGGTEAEGVPVFNTVAEAVQTTGANASVIYVPAPFAADAIMEAVDAELDLVICITEHIPVLDMVKVKRFMEGK-KTRLIGPNCPGVITPEECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQ 164          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_HAEIN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Haemophilus influenzae GN=sucD PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.610e-55
Identity = 104/166 (62.65%), Postives = 124/166 (74.70%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            A+ +DKNT+VICQG TG  GTFH+EQA+ YGT++VGGV+P KGGT HLGLPVFN+V EA   T   A+VIYVP  F            + L+VCITEGIP  DM++VK  LN ++   +IGPNCPG+I P ECKIGIMP +IHK G+VGIVSRSGTLTYEAV QTT
Sbjct:    2 AILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKGGTTHLGLPVFNTVREAVENTGVTATVIYVPASFCKDAIIEAIDAGIQLIVCITEGIPTLDMLKVKQKLN-ETGVVMIGPNCPGVITPDECKIGIMPAHIHKKGKVGIVSRSGTLTYEAVKQTT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_STAAW (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MW2) GN=sucD PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 104/166 (62.65%), Postives = 121/166 (72.89%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_STAAS (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MSSA476) GN=sucD PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 104/166 (62.65%), Postives = 121/166 (72.89%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_STAAR (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain MRSA252) GN=sucD PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 104/166 (62.65%), Postives = 121/166 (72.89%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_STAAN (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain N315) GN=sucD PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 104/166 (62.65%), Postives = 121/166 (72.89%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_STAAM (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sucD PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 104/166 (62.65%), Postives = 121/166 (72.89%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLT 166          
The following BLAST results are available for this feature:
BLAST of FC930463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_NEUCR4.609e-5758.42Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_PSEAE7.861e-5766.27Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCA_CAEEL1.135e-5565.03Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCD_BACSU4.314e-5566.46Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_HAEIN9.610e-5562.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAW1.175e-5262.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAS1.175e-5262.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAR1.175e-5262.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAN1.175e-5262.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAAM1.175e-5262.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC34007G12EF PostHarvC1 Citrus clementina cDNA clone C34007G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930463 ID=FC930463; Name=FC930463; organism=Citrus clementina; type=EST; length=704bp
GAACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTGAATCAAA
TGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATCTCGCAGA
CCGTCTACTGCTTCTTCCGTTTCACATTACAGATTATCATCGTCGGCGGC
GCCGGCGGCCCACTCTCGAAATTATGGGTCGTCGGCGGCGGCGTCTCATC
CGGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGGCATCACC
GGAAAAAACGGCACGTTCCACACCGAACAAGCCATCGAATACGGCACCAA
AATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGGACTGAGCACTTGGGAC
TTCCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAAGGCTAAT
GCTTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTATCATGGA
GGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAAGGAATCC
CTCAACATGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCAATCTAAA
ACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATCAAACCTGGAGAATG
TAAGATTGGCATTATGCCTGGGTATATTCACAAACCTGGGCGGGTTGGAA
TTGTTTCTCGATCTGGTACCTTGACCTACGAAGCAGTTTTTCAAACAACT
GTAG
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