FC930463

Overview
NameFC930463
Unique NameFC930463
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_STAAC (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus aureus (strain COL) GN=sucD PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 104/166 (62.65%), Postives = 121/166 (72.89%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +VF+DKNT+V+ QGITG    FHT+Q ++YGTK+V GVTP KGG    G+PVFN+V EAK ET A  SVIYVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTKIVAGVTPGKGGQVVEGVPVFNTVEEAKNETGATVSVIYVPAPFAADSILEAADADLDMVICITEHIPVLDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_STAES (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sucD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.004e-52
Identity = 102/166 (61.45%), Postives = 122/166 (73.49%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_STAEQ (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sucD PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.004e-52
Identity = 102/166 (61.45%), Postives = 122/166 (73.49%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            +VF+DKNT+V+ QGITG    FHT+Q ++YGT++V GVTP KGG    G+PV+N+V EAK ET AN SV+YVP PF            LD+V+CITE IP  DMV+VK  L  + KTRL+GPNCPG+I   ECKIGIMPGYIHK G VG+VSRSGTLTYEAV Q T
Sbjct:    2 SVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEAKNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGR-KTRLVGPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Aquifex aeolicus GN=sucD PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.074e-49
Identity = 96/167 (57.49%), Postives = 120/167 (71.86%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVK-AALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            A+ V+K+T+V+ QGITGK G+FH +Q  EYGT++V GVTP KGG E  G+PVFN+V EA  ET AN S+I+VP PF            ++LVVCITEGIP  DM+ VK   L      +L+GPNCPG+I PGE K+GIMPG+I K G++GIVSRSGTLTYEA +Q T
Sbjct:    2 AILVNKDTKVVVQGITGKEGSFHAKQCKEYGTQVVAGVTPGKGGMEVEGIPVFNTVKEAVKETGANCSLIFVPAPFAADAIVEALDAGIELVVCITEGIPVKDMMMVKDYMLKNYPNAKLVGPNCPGVITPGEAKVGIMPGHIFKRGKIGIVSRSGTLTYEAAYQLT 168          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 2 OS=Archaeoglobus fulgidus GN=sucD2 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.243e-46
Identity = 92/166 (55.42%), Postives = 114/166 (68.67%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            A+ VD+ T+V+ QGITG  G FHTE+ + YGTK+V GVTP KGGTE LG+PV++SV EA  E  ANASVI+VP PF            + ++VCITEGIP HD +++   +     T LIGPNCPGII PG+  +GIMP  I KPG VGIVSRSGTLTY+  +  T
Sbjct:    2 AIIVDERTKVVVQGITGYQGKFHTERMLNYGTKIVAGVTPGKGGTEVLGVPVYDSVKEAVREADANASVIFVPAPFAADAVMEAADAGIKVIVCITEGIPVHDELKMYWRVKEAGAT-LIGPNCPGIISPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLT 166          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCA_YEAST (Succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=LSC1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.154e-46
Identity = 93/166 (56.02%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  206 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG-ECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            + + K+T+VI QG TGK GTFH   + EYGT +VGG  PKK G  HLG PVF SV +A  ET A AS I+VPPP             + L VCITEGIPQHDM+ +   L  Q KTRL+GPNCPGII P  + +IGI P  I + G++GI+SRSGTLTYEAV QTT
Sbjct:   31 LLLPKDTKVIFQGFTGKQGTFHASISQEYGTNVVGGTNPKKAGQTHLGQPVFASVKDAIKETGATASAIFVPPPIAAAAIKESIEAEIPLAVCITEGIPQHDMLYIAEMLQTQDKTRLVGPNCPGIINPATKVRIGIQPPKIFQAGKIGIISRSGTLTYEAVQQTT 196          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: MTKB_METEA (Malate--CoA ligase subunit alpha OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=mtkB PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.461e-43
Identity = 84/167 (50.30%), Postives = 111/167 (66.47%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNR---QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQ 694
            ++ +D+ T ++ QGITG  GTFH ++ I YG+ +VGGVTP KGG  H G+PVFN+V EA   T A  S+ +V PPF            L LV  IT+GIP  DM+RVK  L R   + +T ++GPNC GII PG+  +GIMPG+I+ PG+VG++SRSGTL YEA  Q
Sbjct:    2 SILIDEKTPILVQGITGDKGTFHAKEMIAYGSNVVGGVTPGKGGKTHCGVPVFNTVKEAVEATGATTSITFVAPPFAADAIMEAADAGLKLVCSITDGIPAQDMMRVKRYLRRYPKEKRTMVVGPNCAGIISPGKSMLGIMPGHIYLPGKVGVISRSGTLGYEAAAQ 168          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_THETH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Thermus thermophilus GN=sucD PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.439e-42
Identity = 88/160 (55.00%), Postives = 113/160 (70.62%), Query Frame = 2
Query:  206 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEA 685
            + V++ TRV+ QGITG+ G FHT+Q ++YGTK+V GVTP KGGTE LG+PV+++V EA A  + +AS+I+VP P             + L+V ITEGIP  DMVR    + +   +RLIG NCPGII   E KIGIMPG++ K GRVGI+SRSGTLTYEA
Sbjct:    2 ILVNRETRVLVQGITGREGQFHTKQMLDYGTKIVAGVTPGKGGTEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEA 160          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit alpha 1 OS=Archaeoglobus fulgidus GN=sucD1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 84/160 (52.50%), Postives = 112/160 (70.00%), Query Frame = 2
Query:  203 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYE 682
            A+ VD+NTRVI QGITG  G+F  ++ ++YGTK+VGGVTP KGG+E  G+PV+N+V EA AET A+ S+IYVP  F            L LVVC+TEGIP +D + +   L R+ K+ L+GPNCPG+I PG  K+G++P      G +G+VSRSGTLTY+
Sbjct:    5 AILVDENTRVIVQGITGFQGSFQAKRMLDYGTKVVGGVTPGKGGSEVHGIPVYNTVEEAVAETNADTSIIYVPARFATDAIFEAFDAGLRLVVCVTEGIPLYDEMLIHRKL-REVKSMLLGPNCPGVISPGRSKVGLLPDRSFTQGNLGVVSRSGTLTYQ 163          
BLAST of FC930463 vs. ExPASy Swiss-Prot
Match: SUCD_METTH (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Methanobacterium thermoautotrophicum GN=sucD PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.714e-41
Identity = 89/165 (53.94%), Postives = 110/165 (66.67%), Query Frame = 2
Query:  206 VFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT 700
            + +D++TR + QGITGK G+FHT Q +EYGT++V GVTP KGG E LG+ V+NSV E   E   NAS+I+VP PF            LDLVV ITE IP HD +++    +R  KT +IGPN PGII PG  K+GIMP +I   G +GIVSRSGTLTYE   Q T
Sbjct:    7 ILLDEDTRCLVQGITGKQGSFHTRQMLEYGTRIVAGVTPGKGGQEFLGVDVYNSVEEVTEEMDVNASIIFVPAPF-AKDAAFESIKHLDLVVIITEHIPVHDSMQIMEYASRMGKT-VIGPNTPGIITPGIGKLGIMPTHIFTEGTIGIVSRSGTLTYEFAAQLT 169          
The following BLAST results are available for this feature:
BLAST of FC930463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCD_STAAC1.175e-5262.65Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAES2.004e-5261.45Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_STAEQ2.004e-5261.45Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD_AQUAE2.074e-4957.49Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD2_ARCFU6.243e-4655.42Succinyl-CoA ligase [ADP-forming] subunit alpha 2 ... [more]
SUCA_YEAST8.154e-4656.02Succinyl-CoA ligase [ADP-forming] subunit alpha, m... [more]
MTKB_METEA6.461e-4350.30Malate--CoA ligase subunit alpha OS=Methylobacteri... [more]
SUCD_THETH1.439e-4255.00Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]
SUCD1_ARCFU3.206e-4252.50Succinyl-CoA ligase [ADP-forming] subunit alpha 1 ... [more]
SUCD_METTH2.714e-4153.94Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007G12EF PostHarvC1 Citrus clementina cDNA clone C34007G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930463 ID=FC930463; Name=FC930463; organism=Citrus clementina; type=EST; length=704bp
GAACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTGAATCAAA
TGGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATCTCGCAGA
CCGTCTACTGCTTCTTCCGTTTCACATTACAGATTATCATCGTCGGCGGC
GCCGGCGGCCCACTCTCGAAATTATGGGTCGTCGGCGGCGGCGTCTCATC
CGGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGGCATCACC
GGAAAAAACGGCACGTTCCACACCGAACAAGCCATCGAATACGGCACCAA
AATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGGACTGAGCACTTGGGAC
TTCCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAAGGCTAAT
GCTTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTATCATGGA
GGCTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAAGGAATCC
CTCAACATGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCAATCTAAA
ACTCGGCTGATTGGTCCCAACTGCCCTGGTATCATCAAACCTGGAGAATG
TAAGATTGGCATTATGCCTGGGTATATTCACAAACCTGGGCGGGTTGGAA
TTGTTTCTCGATCTGGTACCTTGACCTACGAAGCAGTTTTTCAAACAACT
GTAG
back to top