FC930476

Overview
NameFC930476
Unique NameFC930476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 63/239 (26.36%), Postives = 108/239 (45.19%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEG-----IQTEVNDMDWESTFYVRHLP--QSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            L+NHG++ E ++ ++  T+  +R   +++         +EG     + +E   +DW    ++   P  +  +   P     +R+ M                            L K         F  +    P         GL  H+DA G+ LL Q ++V+GL + KD +W+ + P+  + VVN+GD IE+++NG YKS+EHR +  TD E R S+A+F++P     I P P L+
Sbjct:   84 LINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLR----TVFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKE-RLSIAAFHDPEYGTKIGPLPDLV 317          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.207e-17
Identity = 66/243 (27.16%), Postives = 114/243 (46.91%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEG-----IQTEVNDMDWESTFYVRHLPQSTINEV-PDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTK----VSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            + NHG+    +D +E LT + +R  ++++ K   +   + G     I +  N   W   F V   P     ++ P    +Y +++                            ++  + G N    GT+    +++YP CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+  PP+  S+VVN+GD + ++TNG + SV HR         R S+A  + P SD +I P P L+
Sbjct:   76 ITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSPLHDFRKLWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQ--WAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNN-TAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRA-RVNHVRSRFSMAYLWGPPSDIMISPLPKLV 314          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 67/246 (27.24%), Postives = 112/246 (45.53%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVER-------LTKAHYRKCMEQRFKELVASRALE-------GIQTEVNDMDWE-STFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPAL 695
            +VNHGI  E +  +++       L +A  R C  +        R +E       GI  ++    W  S+   R+ P+S   +  +++EEY + +                          G  ++     NG  +   +++YPP P  D   GL  HTD  G+ L+  ++ + GLQ+ KD  WI+V  +  +I+VN+GDQI +++NGKYK+V H+     + + R S     +P  D V+ P P L
Sbjct:   31 VVNHGIPTELIQRLQKVGREFFELPEAEKRSCAREAGSVEGYGRRIELDIKKRKGIVDQIYLSTWPPSSVNYRYWPKSP-PDYREVNEEYARHVKTLSEKIMEWLSEGL-----------GLGREAIKEVNGCWYVMNINHYPPYPHSDSFNGLEPHTDINGLTLIITNE-IPGLQVFKDDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVDKE-KTRMSWPVLVSPTYDMVVGPLPEL 262          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  381 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPG 662
            YPPCP+PDL  G   H+D   + +L  D ++ GLQ+ ++G W DVP +  ++++N+GD +++ITN K+ S+EHRV++      R S+A F+  G
Sbjct:  226 YPPCPEPDLTLGTSQHSDNSFLTVLLPD-QIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTG 318          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 47/112 (41.96%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  369 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV-ISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            ++++YP CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+ VPP   S+VVN+GD   +++NG +KSV HR  ++QT    R S+A  + P SD  I P P L+
Sbjct:  213 QLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNN-TAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQT--RARLSVAFLWGPQSDIKISPVPKLV 321          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.585e-17
Identity = 59/234 (25.21%), Postives = 109/234 (46.58%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQR--FKELVASRALEGIQTEV-----NDMDWESTFYVRHLPQ--STINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVI 677
            L+NHGI  E +D V+   K  +   +E++  +    A+  ++G  +++       ++WE  F+    P+  + ++  P    +Y                              G L+K   GA       K++ YP CP+P+L  G  AHTD   +  +  +  V GLQL  + +W+    + +SI++++GD +E+++NGKYKS+ HR +   + + R S A F  P  + ++
Sbjct:   88 LINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLRALATKILSVLSIGLGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTDVSALTFILHN-MVPGLQLFYEDKWVTAKCVPNSIIMHIGDTLEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKEKIV 319          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  318 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPA 692
            GY ++ F  ++      + + YPPCP+P+   G   H D   + +L QDD V GL++L DG+W  V P+  ++V+N+GD    ++NG+YKS  HR +     E R SLA F  P  D V+ P P+
Sbjct:  216 GYYREFFADSSSIM---RCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE-RRSLAFFLCPREDRVVRPPPS 335          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  318 GYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPA 692
            GY ++ F  ++      + + YPPCP+P+   G   H D   + +L QDD V GL++L DG+W  V P+  ++V+N+GD    ++NG+YKS  HR +     E R SLA F  P  D V+ P P+
Sbjct:  216 GYYREFFADSSSIM---RCNYYPPCPEPERTLGTGPHCDPTALTILLQDD-VGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRE-RRSLAFFLCPREDRVVRPPPS 335          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 38/81 (46.91%), Postives = 59/81 (72.84%), Query Frame = 3
Query:  381 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDG 623
            YP CP+P+L  G   H+D+G + +L QD ++ GLQ+L + QWIDVP +  ++V+N+ D +++ITN K+KSVEHRV++   G
Sbjct:  253 YPACPQPELTFGTSKHSDSGFLTILMQD-QIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVG 332          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 35/92 (38.04%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  381 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYN 656
            +PPCP+PDL  G   H+D G  + +   D + GLQ+ ++G W DVP +  ++++N+GD +++ITN K+ S++HRV++      R S+A F++
Sbjct:  226 FPPCPEPDLTFGTSKHSD-GSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFH 316          
The following BLAST results are available for this feature:
BLAST of FC930476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NCS1_COPJA1.207e-1726.36S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
G3OX2_ARATH1.207e-1727.16Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
FLS_MATIN2.058e-1727.24Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
ACCH3_ARATH2.688e-1740.431-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX1_ARATH3.511e-1741.96Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
LDOX_PERFR4.585e-1725.21Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
GAOX2_ORYSJ5.989e-1737.60Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI5.989e-1737.60Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
DV4H_CATRO1.742e-1646.91Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCH2_ARATH3.882e-1638.041-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionC34008A01EF PostHarvC1 Citrus clementina cDNA clone C34008A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930476 ID=FC930476; Name=FC930476; organism=Citrus clementina; type=EST; length=698bp
AGCTGGTGAATCATGGAATTCAGCCGGAGTTTATGGACACAGTGGAGAGA
TTGACCAAGGCGCATTACAGAAAATGTATGGAGCAAAGATTCAAGGAGCT
TGTTGCAAGCAGGGCACTTGAAGGTATCCAAACCGAGGTCAATGACATGG
ACTGGGAAAGCACTTTCTATGTGCGTCACCTCCCTCAGTCGACCATCAAT
GAAGTCCCAGATCTTGATGAGGAATACAGGAAGGTGATGAAGGAATTTGC
ATTGAAATTGGAGAAATTAGCAGAGGAGCTATTGGACTTGTTATGCGAGA
ATCTTGGATTAGAGAAGGGGTACTTGAAAAAGGTCTTTCATGGGGCAAAC
GGACCAACCTTTGGTACCAAAGTTAGCAACTACCCACCATGCCCCAAGCC
AGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCATCATCT
TGCTCTTCCAGGATGACAAAGTCAGTGGCCTTCAGCTTCTTAAAGATGGC
CAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAACCTCGG
TGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGAGCACA
GAGTGATTTCTCAAACCGACGGCGAGGGCCGGACGTCCCTAGCTTCATTC
TACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTGCTT
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