FC930476

Overview
NameFC930476
Unique NameFC930476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 70/251 (27.89%), Postives = 100/251 (39.84%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFK--------------ELVASRALEGIQTEVND-MDWESTFY--VRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ--LLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            ++NHG   E M     + K  +    E++ K              E  A   +EG Q    + + W+ T       L Q  +N  P+   +YR+V+                          GY    F            + YPPCP P    G   H D   I LL QD  + GLQ  ++KD  WI V P+  + VVNLG  ++VITN K++   HRV++    + R S+A+   P     I PA  LL
Sbjct:   63 VINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLKLGY----FDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITLLQQD--LPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRD-RVSIATLIGPDYSCTIEPAKELL 306          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  369 KVSNYPPCPKPDL-------IKGLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            ++++YPPCP  +        + G   HTD   II + + +  SGLQ+ L DG WI VPP   S   N+GD ++V+TNG++KSV HRV++    + R S+  F  P     I P   L+
Sbjct:  171 RLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQ-IISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCK-KSRVSMIYFAGPSLTQRIAPLTCLI 286          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  381 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYP 683
            YP CP P    GL AHTD+G    + Q   V GLQL + G  +W+ VP +  ++VVN+GD  +++TNG++ SV HR +   + + R SL  F  P +   + P
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESD-RISLGYFLGPPAHVKVAP 314          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  369 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAV-IYPAPALL 698
            K++ YP CP+P+L  G+ AHTD   +  +  +  V GLQ+L   +W+       +I+V++GD +E+++NG+Y SV HR +   +   R S   F  P  D+V ++P P L+
Sbjct:  235 KINYYPRCPQPELAVGVEAHTDVSALSFILHNG-VPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAV-RISWVVFCEPPPDSVLLHPLPELV 343          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 61/244 (25.00%), Postives = 99/244 (40.57%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTE-----VNDMDWESTFYVRHLPQSTINEVP----DLDEEYRK---VMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            +VNHGI  E +    R   A +   + ++ + L       G  +       + + W+ T   R  P      V      L E++R+   V                            + ++ F G +      +++ YPPC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  +    R SLA F  P  D V+ P   L+
Sbjct:   74 VVNHGIDAELLADAHRCVDAFFTMPLPEKQRALRRPGESCGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSIM---RLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSK-VPRKSLAFFLCPEMDKVVAPPGTLV 312          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 57/223 (25.56%), Postives = 98/223 (43.95%), Query Frame = 3
Query:    3 LVNHGIQPEFMDTV----ERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVMXXXXXXXXXXXXXXXXXXXXXXXXXXGYLKKVFHGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNP 659
            +VNHGI  +  + +    ++L    +   + +RF +L  +    G  +  +   + S     H+  S ++ + D     R ++                           Y + +F   N      +++ Y P      + GL  HTD   + +L QD ++ GL+L  +GQWI V P   ++ VN+GD  + ++NG Y+SV HRVIS  + E R S+A F  P
Sbjct:   75 IVNHGIPKDVFEMMLLEEKKLFDQPFSVKVRERFSDLSKNSYRWGNPSATSPAQY-SVSEAFHIILSEVSRISDDRNNLRTIVETYVQEIARVAQMICEILGKQVNVSSEYFENIFELENS---FLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQD-QIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIE-RMSIAFFVCP 291          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  369 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            +++ YPPC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  +    R SLA F  P  D V+ P   L+
Sbjct:  205 RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNS-RVPRKSLAFFLCPEMDKVVAPPGTLV 312          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  369 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            +++ YPPC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  +    R SLA F  P  D V+ P   L+
Sbjct:  205 RLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNS-RVPRKSLAFFLCPEMDKVVAPPGTLV 312          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  369 KVSNYPPCPKP--DLIK-GLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDGEGRTSLASFYNPGSDAVIYPAPALL 698
            ++++YP   +    ++K G   HTD   II + + +  +GLQ+ +KDG W+ VPP   S  +N+GD ++V+TNG++KSV+HRV++ T    R S+  F  P     I P P L+
Sbjct:  185 RLNHYPAAEEEAEKMVKVGFGEHTDPQ-IISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADT-RRSRISMIYFGGPPLSQKIAPLPCLV 296          
BLAST of FC930476 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  369 KVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK-DGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV-ISQTDGEGRTSLASFY-NPGSDAVIYPAPAL 695
            ++++YP CP+P+   GL AHTD+  + +L Q +   GLQ+ + +  W+ V P    +VVN+GD   +++NGK  SV HR  ++ T    R S+A  +  P  D  I P   L
Sbjct:  208 RLNHYPVCPEPERAMGLAAHTDSTILTILHQSN-TGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHT--RSRISIAYLWGGPAGDVQIAPISKL 316          
The following BLAST results are available for this feature:
BLAST of FC930476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
HY6H_HYONI1.803e-1327.89Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
G2OX1_ARATH2.355e-1337.29Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G3O23_WHEAT4.017e-1338.83Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
LDOX_MAIZE5.246e-1335.14Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
GAO1B_WHEAT8.949e-1325.00Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
G2OX7_ARATH8.949e-1325.56Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
GAO1D_WHEAT2.604e-1236.36Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAO1A_WHEAT2.604e-1236.36Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
G2OX2_ARATH2.604e-1236.84Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX4_ARATH8.376e-1135.71Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC34008A01EF PostHarvC1 Citrus clementina cDNA clone C34008A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930476 ID=FC930476; Name=FC930476; organism=Citrus clementina; type=EST; length=698bp
AGCTGGTGAATCATGGAATTCAGCCGGAGTTTATGGACACAGTGGAGAGA
TTGACCAAGGCGCATTACAGAAAATGTATGGAGCAAAGATTCAAGGAGCT
TGTTGCAAGCAGGGCACTTGAAGGTATCCAAACCGAGGTCAATGACATGG
ACTGGGAAAGCACTTTCTATGTGCGTCACCTCCCTCAGTCGACCATCAAT
GAAGTCCCAGATCTTGATGAGGAATACAGGAAGGTGATGAAGGAATTTGC
ATTGAAATTGGAGAAATTAGCAGAGGAGCTATTGGACTTGTTATGCGAGA
ATCTTGGATTAGAGAAGGGGTACTTGAAAAAGGTCTTTCATGGGGCAAAC
GGACCAACCTTTGGTACCAAAGTTAGCAACTACCCACCATGCCCCAAGCC
AGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCATCATCT
TGCTCTTCCAGGATGACAAAGTCAGTGGCCTTCAGCTTCTTAAAGATGGC
CAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAACCTCGG
TGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGAGCACA
GAGTGATTTCTCAAACCGACGGCGAGGGCCGGACGTCCCTAGCTTCATTC
TACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTGCTT
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