FC930478

Overview
NameFC930478
Unique NameFC930478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_MYCS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma synoviae (strain 53) GN=gpmI PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 55/227 (24.23%), Postives = 106/227 (46.70%), Query Frame = 1 
Query:    1 GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIR-YAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            G++ ++F SA+E +  L+   N  D++L P      + +    + D DAV+ FNFR DR   L+  +       +      K+  +  M++Y+G   +  +       ++   G+            +ET K+ HVT+F +G     + ++  + + + S    ++   P+M A EI  +      ++ F    +N  N DMVGHTG +E+T+VA +  D+ +  ++
Sbjct:  204 GKSGNEFSSALEYLD-LQYSQNITDEFLEPAKNSTLDSRYF--LKDNDAVIFFNFRPDRARQLSHLILNSSLYDYQPSHLVKVSDFVSMMKYEG---IKCNIAYEEMLVNNPIGKVFEDANKTQLRVAETQKYAHVTYFMDGGVDVEYKNS--KRIMVDSLKVESYADTPQMSAEEITSQVISH--AKDFDLTILNYANPDMVGHTGVLESTLVALEVLDKQLSRLV 420
The following BLAST results are available for this feature:
BLAST of FC930478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
GPMI_MYCS56.198e-1124.232,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34008A03EF PostHarvC1 Citrus clementina cDNA clone C34008A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930478 ID=FC930478; Name=FC930478; organism=Citrus clementina; type=EST; length=684bp
GGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAACT
AAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTTGTCATTG
TTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGTGATGCAGTT
GTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGCTAAGGCCCT
TGAATATGAAGATTTTGACAAATTTGATCGAGTTCGGTTCCCTAAAATCC
GTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTTCCCAGTCAT
TACCTTGTGTCTCCTCCAGAGATAGACAGAACATCTGGTGAATATTTAGT
GCATAATGGTGTCCGTACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGAC
ATGTCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAAT
TTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGT
ACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAGAGGGCAAAGAAGGCCA
TCCTTAGTCGCAGGTTCCACCAGGTACGTGTTAACCTACCAAATAGTGAC
ATGGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGC
TGCTGATGAAGCTGTCAAGATAATCATTNGATGC
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