FC930478

Overview
NameFC930478
Unique NameFC930478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_IDILO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Idiomarina loihiensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.505e-28
Identity = 83/220 (37.73%), Postives = 121/220 (55.00%), Query Frame = 1
Query:   25 SAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGML-QYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            +A +AV+   E+    D+++ P VI         PI +GD+V   NFRADR   + +A   +DFD FDR     I    ML QY   L+ PS +   PPE ++   GE+L  +       SET K+ HVTFF++G R   F+   E+ V IPS    T+++QP+M + ++ +    AI S+ F  V  N PN DMVGHTG+ +A V AC+A D +V  ++
Sbjct:  218 NATDAVENAYER-GETDEFVTPVVIGQP-----APIANGDSVFFMNFRADRAREMTQAFVDKDFDGFDRGSRADISEFVMLTQYADTLEAPSAF---PPEPLNNVLGEWLAKHDKTQLRISETEKYAHVTFFFSGGREQEFEG--EKRVLIPSPKVKTYDLQPEMSSEQLTDELVAAIESQAFDVVICNYPNGDMVGHTGNFDAAVKACEAVDHSVGRVV 426          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_BACTN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides thetaiotaomicron GN=gpmI PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 75/221 (33.94%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   22 KSAVEAVKKLREQ--PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            K A + V+ ++E       D+++ P V    N    G I +GD V+ FN+R DR   L   L  +D  +      P ++Y  M  YD   K   H L     +  T GEY+   G+     +ET K+ HVTFF+NG R   FD+  E+ + +PS    T++++P+M A E+ ++   AI   ++  + VN  N DMVGHTG  EA   A  A D  VK +I
Sbjct:  209 KKATDMVQAMQESYDEGVTDEFIKPIV----NANCDGTIKEGDVVIFFNYRNDRAKELTVVLTQQDMPEAGMHTIPGLQYYCMTPYDASFK-GVHILFDKENVANTLGEYIASKGLNQLHIAETEKYAHVTFFFNGGRETPFDN--EDRILVPSPKVATYDLKPEMSAYEVKDKLVDAINENKYDFIVVNFANGDMVGHTGIYEAIEKAVVAVDACVKDVI 422          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_VIBFM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain MJ11) GN=gpmI PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 78/225 (34.67%), Postives = 120/225 (53.33%), Query Frame = 1
Query:    4 EAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            +A   F +AVE ++    +   ND+++    I  E G+    IVDGDAV+  N+RADR   + +      FD F R  FP I +  + QY  ++ L   +  +P  ++ T GE+L   G      SET K+ HVTFF+NG     F+    + V  P  +  T+++QP+M A E+ E+   AI S ++  +  N PN DMVGHTG  +ATV A ++ DE +  ++
Sbjct:  210 KAEFTFATAVEGLEAAYAREE-NDEFVQATEIKAE-GEESAAIVDGDAVIFMNYRADRARQITRTF-VPSFDGFTRNVFPAIDFVMLTQYAADIPLLCAF--APASLENTYGEWLSKEGKTQLRISETEKYAHVTFFFNGGIEDEFEGEERQLVASPKVA--TYDLQPEMSAPELTEKLVAAIKSGKYDAIVCNFPNCDMVGHTGVYDATVKAVESLDECIGKVV 427          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 78/222 (35.14%), Postives = 120/222 (54.05%), Query Frame = 1
Query:   16 KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNL-EEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            K  S  EA++   +    ND+++ P VI+ ++ K VG I + D+++ FNFR DR   + +AL  E+FD F R       +  + +YD  ++   H    P  +  T GEYL  NG      +ET K+ HVTFF+NG   G  + N  EE + IPS    T++++P+M A E+ ++A   +   +F  + +N  N DMVGHTG IEA + A +  D  V  +I
Sbjct:  210 KANSIEEAIQNSYDD-GKNDEFIMPTVIMKDD-KPVGSIKENDSIIFFNFRPDRARQITRALVCEEFDGFKREDIKNF-FVCLTEYDITIE-NVHIAFGPQSLANTLGEYLAKNGKTQLRAAETEKYAHVTFFFNG---GVEEPNKGEERLLIPSPKVATYDLKPEMSAYELTDKALDKLGEDKFDFIVLNFANPDMVGHTGSIEAAIKAVETVDTCVGKLI 424          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_PSYIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychromonas ingrahamii (strain 37) GN=gpmI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.287e-28
Identity = 74/225 (32.89%), Postives = 118/225 (52.44%), Query Frame = 1
Query:    4 EAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            +A H  +SA+  ++    + + ND+++   VI +        I DGDAV+  NFRADR   L       +F  F+R   P + +  + ++  ++  P+ +  S   +  T GE+L  +G      SET K+ HVTFF+NG     F    E+   I S S  T+++QP+M ++E+ E+   AI S ++  +  N PN DMVGHTG  +A V AC+A D  V  ++
Sbjct:  211 KADHTAESALAGLENAYAR-DENDEFVKATVIGEP-----AAIEDGDAVLFMNFRADRARELTYTFTDSNFSGFERASVPNVHFVTLTEFADDITAPAAF--SSERLTNTLGEWLADHGKTQLRISETEKYAHVTFFFNGGVESEFKG--EDRTLIKSPSVATYDMQPEMSSIELTEKLVSAIKSTKYDVIICNYPNGDMVGHTGVYDAAVKACEAVDSCVGKVV 425          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_CLOBL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gpmI PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 82/220 (37.27%), Postives = 124/220 (56.36%), Query Frame = 1
Query:   25 SAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPE-IDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNL-EEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            SAVE ++K   + N  D+++ P V++ E GK    I + D+VV FNFR DR   L +A+  + FD F+R     + Y  M +YD  L+  +  +  PPE ++ T GEY+  NG +    +ET K+ HVTFF+NG   G  + N  E+ V IPS    T+++QP+M A E+ ++  + +   ++  V +N  N DMVGHTG  EA   A +  DE V  I+
Sbjct:  215 SAVEGLEK-SYRDNKTDEFVLPSVVLKE-GKPKAKIENKDSVVFFNFRPDRARELTRAINDKVFDGFERETLD-LTYVTMTEYDSTLE--NVEVAFPPEHLNNTLGEYVSKNGKKQLRIAETEKYAHVTFFFNG---GVEEPNEGEDRVLIPSPKVATYDMQPEMNAYEVTDKLLERLDEDKYDMVILNFANPDMVGHTGVFEAAKKAIETVDECVGKIV 426          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_BACFR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis GN=gpmI PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 75/218 (34.40%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   22 KSAVEAVKKLREQ--PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVK 669
            K A + V+ ++E       D+++ P V    N    G I +GD V+ FN+R DR   L   L  +D  +      P ++Y  M  YD   K   H L     +  T GEYL  NG +    +ET K+ HVTFF+NG R   +D+  E+ + +PS    T++++P+M A E+ ++   AI   ++  + VN  N DMVGHTG  EA   A  A D  VK
Sbjct:  209 KKATDMVQAMQESYDEGVTDEFIKPIV----NAGVDGTIKEGDVVIFFNYRNDRAKELTVVLTQQDMPEAGMHTIPGLQYYCMTPYDASFK-GVHILFDKENVANTLGEYLAANGKKQLHIAETEKYAHVTFFFNGGRETPYDN--EDRILVPSPKVATYDLKPEMSAYEVKDKLVAAINENKYDFIVVNYANGDMVGHTGIYEAIEKAVVAVDACVK 419          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_BACFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gpmI PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 75/218 (34.40%), Postives = 110/218 (50.46%), Query Frame = 1
Query:   22 KSAVEAVKKLREQ--PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVK 669
            K A + V+ ++E       D+++ P V    N    G I +GD V+ FN+R DR   L   L  +D  +      P ++Y  M  YD   K   H L     +  T GEYL  NG +    +ET K+ HVTFF+NG R   +D+  E+ + +PS    T++++P+M A E+ ++   AI   ++  + VN  N DMVGHTG  EA   A  A D  VK
Sbjct:  209 KKATDMVQAMQESYDEGVTDEFIKPIV----NAGVDGTIKEGDVVIFFNYRNDRAKELTVVLTQQDMPEAGMHTIPGLQYYCMTPYDASFK-GVHILFDKENVVNTLGEYLAANGKKQLHIAETEKYAHVTFFFNGGRETPYDN--EDRILVPSPKVATYDLKPEMSAYEVKDKLVAAINENKYDFIVVNYANGDMVGHTGIYEAIEKAVVAVDACVK 419          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 70/202 (34.65%), Postives = 111/202 (54.95%), Query Frame = 1
Query:   73 DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            +Q +   VI ++  K V  + D D+V+ FNFRADR   +  A   +DFD F R + P++ +  M QYD  L++P  +   P +++   GE L  +G+     +ET K+ HVT+F NG     +    E+   IPS    T++++P+M A EI +   + I S ++  + +N  N DMVGHTG  EA V A +A D+ +  I+
Sbjct:  243 EQVITEQVITEQAEKPVATVQDNDSVIFFNFRADRARQITWAFVKDDFDGFMREKRPEVYFVCMTQYDETLEVPIAF--PPIKLENVLGEVLSKHGLIQLRIAETEKYAHVTYFLNGGEEKRYKD--EDRCLIPSPKIATYDLKPEMSAYEITDEVIRRIQSGKYDVIVLNFANMDMVGHTGIFEAAVKAVEAVDKCIGRIV 440          
BLAST of FC930478 vs. ExPASy Swiss-Prot
Match: GPMI_VIBF1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.623e-27
Identity = 77/225 (34.22%), Postives = 119/225 (52.89%), Query Frame = 1
Query:    4 EAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDKFDRVRFPKIRYAGMLQYDGELKLPSHYLVSPPEIDRTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGYFDSNLEEYVEIPSDSGITFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIII 678
            +A   F +AVE ++    +   ND+++    I  E G+    IVDGDAV+  N+RADR   + +      FD F R  FP I +  + QY  ++ L   +  +P  ++ T GE+L   G      SET K+ HVTFF+NG     F+    + V  P  +  T+++QP+M A E+ E+   AI S ++  +  N PN DMVGHTG  +A V A ++ DE +  ++
Sbjct:  210 KAEFTFATAVEGLEAAYAREE-NDEFVQATEIKAE-GEESAAIVDGDAVIFMNYRADRARQITRTF-VPSFDGFTRNVFPAIDFVMLTQYAADIPLLCAF--APASLENTYGEWLSKEGKTQLRISETEKYAHVTFFFNGGIEDEFEGEERQLVASPKVA--TYDLQPEMSAPELTEKLVAAIKSGKYDAIVCNFPNCDMVGHTGVYDAAVKAVESLDECIGKVV 427          
The following BLAST results are available for this feature:
BLAST of FC930478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
GPMI_IDILO2.505e-2837.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACTN3.271e-2833.942,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBFM4.272e-2834.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOD65.580e-2835.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYIN7.287e-2832.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOBL9.517e-2837.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFR9.517e-2834.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFN1.243e-2734.402,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI2_METBF1.243e-2734.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBF11.623e-2734.222,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34008A03EF PostHarvC1 Citrus clementina cDNA clone C34008A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930478 ID=FC930478; Name=FC930478; organism=Citrus clementina; type=EST; length=684bp
GGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGTCAAAAAACT
AAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCATTTGTCATTG
TTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGTGATGCAGTT
GTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGCTAAGGCCCT
TGAATATGAAGATTTTGACAAATTTGATCGAGTTCGGTTCCCTAAAATCC
GTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTTCCCAGTCAT
TACCTTGTGTCTCCTCCAGAGATAGACAGAACATCTGGTGAATATTTAGT
GCATAATGGTGTCCGTACTTTTGCTTGCAGTGAGACTGTCAAGTTTGGAC
ATGTCACTTTCTTCTGGAATGGAAACCGCTCTGGGTATTTCGACTCGAAT
TTGGAGGAATATGTGGAAATTCCTAGTGATTCTGGAATTACTTTCAATGT
ACAGCCCAAGATGAAGGCTTTGGAGATTGCTGAGAGGGCAAAGAAGGCCA
TCCTTAGTCGCAGGTTCCACCAGGTACGTGTTAACCTACCAAATAGTGAC
ATGGTGGGGCACACGGGAGATATTGAGGCAACAGTGGTGGCATGCAAGGC
TGCTGATGAAGCTGTCAAGATAATCATTNGATGC
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