FC930498

Overview
NameFC930498
Unique NameFC930498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.362e-29
Identity = 70/171 (40.94%), Postives = 102/171 (59.65%), Query Frame = 3
Query:  252 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQ-----------VAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWT--LVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            F+F+E++ AT NF     +GEGG+G ++KG +               VA+K L P   QG  E+  E++ L ++ HPNLV LVG C E     LVYE++P GSLE+ L  +  + PL+W  R+++A      L FLH  K   +++ D K ANILLDA+F +KLSDFG+++
Sbjct:   74 FTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHL-FRRGAQPLTWAIRMKVAVGAAKGLTFLHEAK-SQVIYRDFKAANILLDADFNAKLSDFGLAK 242          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: CRK12_ARATH (Putative cysteine-rich receptor-like protein kinase 12 OS=Arabidopsis thaliana GN=CRK12 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 68/164 (41.46%), Postives = 100/164 (60.98%), Query Frame = 3
Query:  243 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKG-LLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            F    F  IE AT NF  + K+G+GG+G +YKG L+   +VA+K L   S QG  EF+ E+ +++K++H NLV L+G C  PE   LVYE++PN SL+  L        L W  R  I   +   +++LH     +I+H DLK +NILLDA+ + K++DFG++R
Sbjct:  352 FQQLDFKTIEVATENFAKTNKLGQGGFGEVYKGTLVNGTEVAVKRLSKTSEQGAQEFKNEVVLVAKLQHRNLVKLLGYCLEPEEKILVYEFVPNKSLDYFLFDPTKQGQLDWTKRYNIIGGITRGILYLHQDSRLTIIHRDLKASNILLDADMIPKIADFGMAR 515          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 71/171 (41.52%), Postives = 102/171 (59.65%), Query Frame = 3
Query:  252 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLL-----------RHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWT--LVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            F+F+E++ AT NF P   +GEGG+G ++KG +             + VA+K L     QG  E+  E++ L ++ HPNLV LVG C E     LVYE++P GSLE+ L  +  + PL+W  R+++A      L FLH  K   +++ D K ANILLDA F SKLSDFG+++
Sbjct:   71 FTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHL-FRRGAQPLTWAIRMKVAIGAAKGLTFLHDAK-SQVIYRDFKAANILLDAEFNSKLSDFGLAK 239          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28
Identity = 71/162 (43.83%), Postives = 105/162 (64.81%), Query Frame = 3
Query:  252 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHM-QVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHS-CKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            F+++E+   T+NF   L  G+GG+G +Y G +    QVA+KML   S QG  +F+ E+++L ++ H NLV LVG C E     L+YEY+ NG L++ +S K     L+W TR++IA E    L +LH+ CKP  +VH D+K  NILL+ +F +KL+DFG+SR
Sbjct:  567 FTYAEVLTMTNNFQKIL--GKGGFGIVYYGSVNGTEQVAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRGGSILNWGTRLKIALEAAQGLEYLHNGCKP-LMVHRDVKTTNILLNEHFDTKLADFGLSR 725          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 74/167 (44.31%), Postives = 100/167 (59.88%), Query Frame = 3
Query:  252 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYLPNGSLEDRLSCKDN---SPPLSWQTRIRIATELCSVLIFLHS-CKPHSIVHGDLKPANILLDANFVSKLSDFGISRFL 731
            FSF EI+ AT NF P   +G+GG+G +YKG L +   VA+K L      G  +FQ E++++    H NL+ L G C  PE   LVY Y+PNGS+ DRL  +DN    P L W  RI IA      L++LH  C P  I+H D+K ANILLD +F + + DFG+++ L
Sbjct:  288 FSFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRLKDPIYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPEERMLVYPYMPNGSVADRL--RDNYGEKPSLDWNRRISIALGAARGLVYLHEQCNP-KIIHRDVKAANILLDESFEAIVGDFGLAKLL 451          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 66/159 (41.51%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  255 SFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEV--WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            ++ E+   T+NF+  L  G+GG+G++Y G L   QVA+KML   S QG  EF+ E+++L ++ H NLV LVG C +     L+YEY+ NG L++ +S K     L+W+ R++IA E    L +LH+     +VH D+K  NILL+  + +KL+DFG+SR
Sbjct:  557 TYPEVLKMTNNFERVL--GKGGFGTVYHGNLEDTQVAVKMLSHSSAQGYKEFKAEVELLLRVHHRNLVGLVGYCDDGDNLALIYEYMANGDLKENMSGKRGGNVLTWENRMQIAVEAAQGLEYLHNGCTPPMVHRDVKTTNILLNERYGAKLADFGLSR 713          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: Y1755_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 71/182 (39.01%), Postives = 111/182 (60.99%), Query Frame = 3
Query:  198 KSRKEASSSSHMPQFFSD---FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEV--WTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHS-CKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            + RK ++       F S+   F++S++   T+NF   + IG+GG+G +Y+G L + Q AIK+L   S QG  EF+ E+++L ++ H  LV+L+G C +     L+YE +  G+L++ LS K     LSW  R++IA E    + +LH+ CKP  IVH D+K  NILL   F +K++DFG+SR
Sbjct:  529 RRRKPSAGKVTRSSFKSENRRFTYSDVNKMTNNFQ--VVIGKGGFGVVYQGCLNNEQAAIKVLSHSSAQGYKEFKTEVELLLRVHHEKLVSLIGYCDDDNGLALIYELMGKGNLKEHLSGKPGCSVLSWPIRLKIALESAIGIEYLHTGCKP-KIVHRDVKSTNILLSEEFEAKIADFGLSR 707          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 71/163 (43.56%), Postives = 95/163 (58.28%), Query Frame = 3
Query:  252 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRL-SCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            F+F E+  AT NF P   +GEGG+G +YKG L      VA+K L  + LQG  EF  E+ +LS + HPNLV L+G C +     LVYE++P GSLED L     +   L W  R++IA      L FLH      +++ D K +NILLD  F  KLSDFG+++
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAK 236          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 83/246 (33.74%), Postives = 132/246 (53.66%), Query Frame = 3
Query:    6 MEELQTALDQKSLLESQIAESDQTAKELEQKIISAVELLQNYKK--EQDELQMERDKAVKEAEELRKSRKEASSSSHMPQFFSDFSFSEIEGATHNFDPSLKIGEGG-YGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE-VWTLVYEYLPNGSLEDRLSCKDN----SPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGI 719
            + ELQ  L  K  +++ +    Q   ELE+ ++   E++   +K   Q ++   R +  KE E +    KE          + ++   +I  AT  +   L++  GG + ++Y+G ++H  VA+K++   SL   + F  ++ +L++IRHPNLV + G C +    L++EY+ NG+L D L         S  L W  RIRIA ++CS L FLHS KP  IVHG L P+ ILLD N V K++ FG+
Sbjct:  332 LAELQEVLSSK--VKTMMEAKSQAEVELERVVLQRGEMITEIEKLRSQRDVFNRRIEFCKEREVIGSVSKEEVKCG-----YREYVAEDIRLATETYSDRLRLKSGGNWTNVYRGRIKHTTVAVKVIGD-SLSDEA-FGAKVKLLNEIRHPNLVAIAGFCSQRPKCLLFEYMHNGNLRDNLFTSQRKSRRSKILKWHDRIRIAHQVCSGLGFLHSVKPKPIVHGRLTPSKILLDRNLVPKITGFGL 568          
BLAST of FC930498 vs. ExPASy Swiss-Prot
Match: WAKLG_ARATH (Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 70/161 (43.48%), Postives = 97/161 (60.25%), Query Frame = 3
Query:  252 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISR 725
            FS +++E AT  F+ S  +G+GG G++YKG+L   M VA+K       +   EF  EI +LS+I H N+V ++G C   EV  LVYE++PN +L D L       P+SW+ R+ IA E+   L +LHS     I H D+K  NILLD    +K+SDFGISR
Sbjct:  378 FSSNDLENATDRFNASRILGQGGQGTVYKGMLEDGMIVAVKKSKALKEENLEEFINEIILLSQINHRNVVKILGCCLETEVPILVYEFIPNRNLFDHLHNPSEDFPMSWEVRLCIACEVADALSYLHSAVSIPIYHRDVKSTNILLDEKHRAKVSDFGISR 538          
The following BLAST results are available for this feature:
BLAST of FC930498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 475
Match NameE-valueIdentityDescription
APK2A_ARATH7.362e-2940.94Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
CRK12_ARATH1.256e-2841.46Putative cysteine-rich receptor-like protein kinas... [more]
APK2B_ARATH1.256e-2841.52Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
Y5181_ARATH2.142e-2843.83Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH3.654e-2844.31Probable LRR receptor-like serine/threonine-protei... [more]
Y5188_ARATH3.654e-2841.51Probable LRR receptor-like serine/threonine-protei... [more]
Y1755_ARATH3.654e-2839.01Probable LRR receptor-like serine/threonine-protei... [more]
PBS1_ARATH4.772e-2843.56Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
PUB50_ARATH8.140e-2833.74Putative U-box domain-containing protein 50 OS=Ara... [more]
WAKLG_ARATH1.063e-2743.48Wall-associated receptor kinase-like 8 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC34008B11EF PostHarvC1 Citrus clementina cDNA clone C34008B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930498 ID=FC930498; Name=FC930498; organism=Citrus clementina; type=EST; length=732bp
AAGTCATGGAAGAACTTCAAACTGCTCTGGATCAGAAATCATTGCTGGAG
AGCCAAATTGCAGAATCCGATCAGACCGCAAAGGAGCTGGAGCAGAAAAT
TATCTCTGCTGTTGAACTTCTGCAGAATTACAAAAAAGAACAAGATGAAT
TGCAGATGGAGCGTGACAAAGCTGTCAAAGAAGCTGAGGAACTGAGGAAA
AGTCGAAAAGAGGCCTCAAGCAGCAGCCACATGCCTCAGTTTTTCTCTGA
TTTCTCTTTTTCAGAGATTGAGGGAGCAACTCATAACTTTGATCCTTCCC
TGAAGATTGGGGAAGGAGGATATGGGAGCATTTACAAAGGTCTCCTGCGA
CATATGCAAGTGGCTATTAAGATGTTGCACCCTCATAGCTTGCAAGGACC
CTCTGAATTTCAACAGGAGATTGATATTCTGAGTAAGATAAGACATCCAA
ATCTTGTAACTCTTGTTGGAGCCTGTCCAGAAGTGTGGACTCTCGTCTAC
GAGTATCTGCCCAATGGCAGCCTTGAAGACCGACTCAGCTGCAAGGATAA
CTCTCCCCCTTTATCCTGGCAAACTCGAATCCGCATTGCCACTGAGCTAT
GCTCTGTCCTTATCTTTCTCCATTCTTGTAAACCTCACAGCATTGTGCAT
GGTGATTTGAAACCTGCCAATATTCTTCTTGATGCTAACTTTGTTAGCAA
ACTTAGTGACTTTGGTATCTCTCGCTTTCTAT
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