FC930510

Overview
NameFC930510
Unique NameFC930510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L P PY  +AL+PH+SK+TLE+H  KHH  YV NLN  + GTE  +GK+LE++V +S   G +   FNNAAQ WNH F+W
Sbjct:    3 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.887e-18
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPH-MSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F   P P+P +ALEP+ M  +T ++H+GKHH AYV NLNK + GT + +  SLEDV+  S+     +  FNNAAQ WNH FFW
Sbjct:    3 FTQPPLPFPKDALEPYGMKAETFDYHYGKHHAAYVTNLNKLVEGTPM-ESLSLEDVIKQSFGDSSKVGVFNNAAQVWNHTFFW 84          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L   PY ++ALEPH+SK+TLEFH GKHH  YV  LN  I GT+  + KSLE++V +S         FNNAAQ WNH F+W
Sbjct:    2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKF-ENKSLEEIVCSSDG-----GVFNNAAQIWNHTFYW 77          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  150 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            L P PY L+AL P +SK+TLEFH+GKHH+ YV NLN  I GTE  +  SLE++V  S         FNNAAQ WNH F+W
Sbjct:    5 LPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGTEF-ENLSLEEIVKKSSG-----GVFNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYW 78          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.411e-17
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYW 78          
The following BLAST results are available for this feature:
BLAST of FC930510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SODF_PSEPK6.805e-1853.66Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_PLEBO8.887e-1850.60Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SALTY1.980e-1753.66Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI1.980e-1753.66Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_PSEHT1.980e-1753.66Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_BORPE3.377e-1755.00Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODF_SHIFL4.411e-1750.00Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_ECOLI4.411e-1750.00Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL64.411e-1750.00Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO574.411e-1750.00Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionC34008C12EF PostHarvC1 Citrus clementina cDNA clone C34008C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930510 ID=FC930510; Name=FC930510; organism=Citrus clementina; type=EST; length=528bp
GATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGTTGACTGGC
CAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGGAGAAACAA
AAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGCGAAATTTGATT
TGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATATGAGCAAG
GACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTATGTGGATAA
CCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAAGTCATTGG
AAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTCCAGCTTTC
AATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAATCCATGAA
ACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACTGATTGAAA
GGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGCA
GCCACTCATTTGGTTCTGGTTGGGCCTG
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