FC930510

Overview
NameFC930510
Unique NameFC930510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEP-HMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--FNNAAQAWNHDFFW 389
            F+L   PY  +AL    MSK+TLE+H   HH+AYVDN NK I GTE  +GKS+E++V  +Y  G +  +  FNNA+Q WNH  FW
Sbjct:    3 FELPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTE-WEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFW 86          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.328e-13
Identity = 40/116 (34.48%), Postives = 56/116 (48.28%), Query Frame = 3
Query:  117 KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            +   + S  F L   PY   + +PH + +T ++H GKHH +YV NLN  +   E    K LE ++  S +K   +  FNNA+Q WNH FFW                  I +DFGS
Sbjct:    5 RKANQTSYPFILPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDREELQKKDLEGIIKWS-SKNSEVTVFNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISQDFGS 119          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.328e-13
Identity = 39/110 (35.45%), Postives = 54/110 (49.09%), Query Frame = 3
Query:  135 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            S  F L   PY   + +PH +++T ++H GKHH +YV NLN  I   E    K LE+++  S    + +   NNA+Q WNH FFW                  I +DFGS
Sbjct:   11 SYPFILPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDREELQKKDLEEIIEWSSQNAE-VAILNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISKDFGS 119          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 40/110 (36.36%), Postives = 53/110 (48.18%), Query Frame = 3
Query:  135 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            S  F L   PY   + +PH + +T ++H GKHH  YV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS
Sbjct:   11 SYPFILPDLPYEKESFKPHFTLETFDYHHGKHHNTYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHTFFWHSIKPQGGGKPSGKILEQINKDFGS 119          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L   PY  +AL P+MS++TLE+H  KHH AYV N NK      L D  SLED+V  SY  G   P FNNA Q +NH  FW
Sbjct:    3 FELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSD-LSLEDIVKKSY--GTNQPLFNNAGQHYNHVHFW 81          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 3
Query:  162 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            PY ++AL P +SK+T+EFH GKH + YVDNLNK I+GTE  +   L  +V  S  +G +   FNNA Q  NH+ ++                  I++ FGS
Sbjct:    9 PYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGS 103          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD-FFWXXXXXXXXXXXXXXXXXLIERDFGS 464
            +++   PY  NALEP +S+ T+++H+GKH + YV+NLN  + GTE  +GK++E  ++AS   G +   FNNA Q  NH  +F                   I+RDFGS
Sbjct:    3 YEMPKLPYANNALEPVISQQTIDYHYGKHLQTYVNNLNSLVPGTEY-EGKTVE-AIVASAPDGAI---FNNAGQVLNHTLYFLQFAPKPAKNEPAGKLGEAIKRDFGS 105          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYF 77          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = 3
Query:  144 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW 389
            F+L+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYF 77          
BLAST of FC930510 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 37/86 (43.02%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  138 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDV--VIASYNKGDLLPAFNNAAQAWNHDFFW 389
            A+F   P PY  NAL+P + + T+E H+GKHH+AYVDNLN QI      D   L  +   I+ YN        NN    +NH FFW
Sbjct:   23 AEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQKQISKYNTA----VRNNGGGHFNHTFFW 104          
The following BLAST results are available for this feature:
BLAST of FC930510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SODF_RHOCA4.564e-1450.59Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_RICTY1.328e-1334.48Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RICPR1.328e-1335.45Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_RICCN1.734e-1336.36Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_RHIME2.265e-1351.22Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_PORGI1.243e-1139.60Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODF_BACFR2.120e-1137.96Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODF_CAMJJ2.769e-1145.12Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE2.769e-1145.12Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODM_ACIAD6.169e-1143.02Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC34008C12EF PostHarvC1 Citrus clementina cDNA clone C34008C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930510 ID=FC930510; Name=FC930510; organism=Citrus clementina; type=EST; length=528bp
GATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGTTGACTGGC
CAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGGAGAAACAA
AAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGCGAAATTTGATT
TGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATATGAGCAAG
GACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTATGTGGATAA
CCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAAGTCATTGG
AAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTCCAGCTTTC
AATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAATCCATGAA
ACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACTGATTGAAA
GGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGCA
GCCACTCATTTGGTTCTGGTTGGGCCTG
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