FC930513

Overview
NameFC930513
Unique NameFC930513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_SHIB3 (60 kDa chaperonin OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/231 (53.25%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADI 693
            E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+++ VG  +
Sbjct:  214 ELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QNEDQNVGIKV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_SHEAM (60 kDa chaperonin OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 122/231 (52.81%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADI 693
            E +N  +LLVDKKI+N R+L+ +LE   +   P+LI+AED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +E+GL L+K   E LG A +VV+TKD TTI+     ++ +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  +   + N+++K G  I
Sbjct:  214 ELDNPFVLLVDKKISNIRELLPILEGLAKTGKPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVIAEEIGLELEKATLEDLGTAKRVVITKDNTTIIDGNGAEEQIKARVGQIKQQIEETTSDYDREKLQERMAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRVASKIANV--DVANEDQKHGVVI 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_SERMA (60 kDa chaperonin (Fragment) OS=Serratia marcescens GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/231 (53.25%), Postives = 162/231 (70.13%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADI 693
            E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LT GTVI +E+GL L+K   E LG A +VV+ KDTT I+     +  +  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++ K+ A+K   DN+++ VG  +
Sbjct:  214 ELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKDMLQDIATLTAGTVISEEIGLELEKATLEDLGQAKRVVINKDTTIIIDGVGDEATIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVAGKIAALKG--DNEDQNVGIKV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_PASMU (60 kDa chaperonin OS=Pasteurella multocida GN=groL PE=3 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/228 (53.95%), Postives = 162/228 (71.05%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVG 684
            E +N  +LLVDKK++N R+L+ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV+ KD TTI+     +  +  RVAQIR  IE +  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R +SKV  ++   DN+E+ VG
Sbjct:  214 ELDNPFILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEDLGQAKRVVINKDNTTIIDGIGDEAQIQGRVAQIRQQIEESTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALIRAASKVAGLQG--DNEEQNVG 439          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_HAEPS (60 kDa chaperonin OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 126/229 (55.02%), Postives = 165/229 (72.05%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKV-DAIKETLDNDERKVG 684
            E EN  +LLVDKKI+N R+++ VLE   +   P+LIIAEDIE EALATLVVN +RG +K+AA+KAPGFG+R+   L DIAILT GTVI +E+G+ L+K   E LG A +VV++KD TTI+     +  +  RVAQIR  IE++  DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RV+DAL+AT+AA            L+R +SKV D +K   DN+E+ VG
Sbjct:  214 ELENPYILLVDKKISNIREILPVLEAVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATIEELGQAKRVVISKDNTTIIDGVGDEVQIKARVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVDDALHATRAAVEEGIIAGGGVALVRAASKVADVVKG--DNEEQNVG 440          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_ECOUT (60 kDa chaperonin OS=Escherichia coli (strain UTI89 / UPEC) GN=groL PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/231 (53.25%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADI 693
            E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+++ VG  +
Sbjct:  214 ELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QNEDQNVGIKV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_ECOSM (60 kDa chaperonin OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/231 (53.25%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADI 693
            E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+++ VG  +
Sbjct:  214 ELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QNEDQNVGIKV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_ECOSE (60 kDa chaperonin OS=Escherichia coli (strain SE11) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/231 (53.25%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADI 693
            E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+++ VG  +
Sbjct:  214 ELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QNEDQNVGIKV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_ECOLU (60 kDa chaperonin OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/231 (53.25%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADI 693
            E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+++ VG  +
Sbjct:  214 ELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QNEDQNVGIKV 442          
BLAST of FC930513 vs. ExPASy Swiss-Prot
Match: CH60_ECOLI (60 kDa chaperonin OS=Escherichia coli (strain K12) GN=groL PE=1 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 5.720e-60
Identity = 123/231 (53.25%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDERKVGADI 693
            E E+  +LL DKKI+N R+++ VLE   +   P+LIIAED+E EALATLVVN +RG +K+AA+KAPGFG+R+   L DIA LTGGTVI +E+G+ L+K   E LG A +VV+ KDTTTI+     + A+  RVAQIR  IE A  DY+REKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R++SK+  ++    N+++ VG  +
Sbjct:  214 ELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRG--QNEDQNVGIKV 442          
The following BLAST results are available for this feature:
BLAST of FC930513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SHIB35.720e-6053.2560 kDa chaperonin OS=Shigella boydii serotype 18 (... [more]
CH60_SHEAM5.720e-6052.8160 kDa chaperonin OS=Shewanella amazonensis (strai... [more]
CH60_SERMA5.720e-6053.2560 kDa chaperonin (Fragment) OS=Serratia marcescen... [more]
CH60_PASMU5.720e-6053.9560 kDa chaperonin OS=Pasteurella multocida GN=groL... [more]
CH60_HAEPS5.720e-6055.0260 kDa chaperonin OS=Haemophilus parasuis serovar ... [more]
CH60_ECOUT5.720e-6053.2560 kDa chaperonin OS=Escherichia coli (strain UTI8... [more]
CH60_ECOSM5.720e-6053.2560 kDa chaperonin OS=Escherichia coli (strain SMS-... [more]
CH60_ECOSE5.720e-6053.2560 kDa chaperonin OS=Escherichia coli (strain SE11... [more]
CH60_ECOLU5.720e-6053.2560 kDa chaperonin OS=Escherichia coli O17:K52:H18 ... [more]
CH60_ECOLI5.720e-6053.2560 kDa chaperonin OS=Escherichia coli (strain K12)... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008D03EF PostHarvC1 Citrus clementina cDNA clone C34008D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930513 ID=FC930513; Name=FC930513; organism=Citrus clementina; type=EST; length=698bp
GAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTACCAATGC
AAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCATACCCAA
TTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAACTCTTGTC
GTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGG
TTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTG
GAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGC
AAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCAC
CACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGG
CGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAG
AAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACA
GGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCG
AAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTT
GGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAA
GGAAACCCTTGATAATGATGAAAGAAAGGTTGGAGCAGATATTGTTAA
back to top