FC930534

Overview
NameFC930534
Unique NameFC930534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 514
            +T++ L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    + +   ANL+I  L   + +K + D FS FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 59/190 (31.05%), Postives = 90/190 (47.37%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLF 616
            +T+  L+ LF   GP+    + +D  T    GY FV+F SE D+  AIKVLN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ Y+  E +  AI A+N       ++ ++V  A +       H      + +AN P      PH  F
Sbjct:  138 MTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQEHGKAKAAHFMSQIGVPSANAPPPPPPPPHMAF 325          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 59/192 (30.73%), Postives = 92/192 (47.92%), Query Frame = 2
Query:   47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK---------------------------------SLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            F V    L  LF +AG V  V V  D++T   +G+GFV   ++E+ + A +  N  ++ G+ IRVN      K                                 S+D    +++GNL   VD+  L + FS  G +V + K++ D D+G SRGFGF++Y S +  + AI+++NG  L  R I VS A ++
Sbjct:   96 FSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV-DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 47/163 (28.83%), Postives = 87/163 (53.37%), Query Frame = 2
Query:   41 IFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL----------FIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 484
            I++++ E+ + + F   GP+ ++ +  D VT  H+G+ FVE+   E A  A++ +N + L G+ I+V +     ++  +   L          ++ ++ PD+ +  +   F AFG I  +  + R+P TG  +GFGFI Y+  ++S  A+ +MN     GQYL
Sbjct:   93 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKI-KSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYL 254          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 47/135 (34.81%), Postives = 74/135 (54.81%), Query Frame = 2
Query:   47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 451
            +  TE+ L E F + G V ++ + KD  T   +G+GF+ F      D  +K  +++   GK I   +A   +   D    +F+G + PDV  K   + FS +G I+ + ++M D DTG SRGFGF++YDS +A D
Sbjct:  168 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIP-RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADAVD 298          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 514
            +T++ L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +++   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14
Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 2
Query:   47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 514
            + V  E L  LF QAG V    V  +R T+  +G+GFV   + E+A+ A+++ N   + G+ + VNKA+       +  ++ +    +++GN+   +D+  L   FS  G +V + +++ D +TG SRGFGF++  S      AI  ++GQ L  R I V+ A
Sbjct:  145 YDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVV-SARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 472
            +T+  L+ LF   GP+    + +D  T    GY FV+F SE D+  AIKVLN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ Y+  E +  AI A+N
Sbjct:  136 MTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 514
            +T+E L  LF   G V +  + +D+V     GYGFV + + +DA+ AI  LN ++L  K I+V+ A    + +   ANL+I  L   + +K + D FS FG I+ N +++ D  TG SRG  FI +D    ++ AI +  G      +  ITV +A
Sbjct:   31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFA 184          
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 53/159 (33.33%), Postives = 86/159 (54.09%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VTE +L++ F +   + +V + KD  +     YG+  F S +DA+ AI+  N   L GK IRV  +  + D +   VG N+F+ NL   V   +L D F  FG IV+    +   + G SRG+GF+ ++  +A+ AAI+ +N   + +++I V    KK
Sbjct:   35 VTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCK--VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190          

HSP 2 Score: 78.9518 bits (193), Expect = 2.956e-14
Identity = 61/204 (29.90%), Postives = 102/204 (50.00%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGERHGTPAERILAANNPSSQKSRPHT 610
            V+E+LL E F + G +V++ + KD    L +GY FV F + EDA  A + +N  K   K + V +A                  +++K +   +N+++ N++  V E+ L   FS  G I T+ K+M D + G S+GFGF+ + + E +  A++  +GQ    + + V+ A KK D K +       R+ A  + SS    P T
Sbjct:  212 VSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGT 412          

HSP 3 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 54/160 (33.75%), Postives = 84/160 (52.50%), Query Frame = 2
Query:   53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523
            VT  +L ++F + G +V+  V         +GYGFV+F  E+ A  AI+ LN   +  K I V K  +     K  +   NL++ NLD DV E LL + F+ FG IV +  I +D +    RG+ F+++D+ E +  A E +NG    ++ + V  A KK
Sbjct:  123 VTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV-SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279          
The following BLAST results are available for this feature:
BLAST of FC930534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
ELAV1_HUMAN2.674e-1534.62ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
SXL_DROSU3.492e-1531.05Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
ROC2_NICSY5.957e-1530.7329 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
PU60B_DANRE5.957e-1528.83Poly(U)-binding-splicing factor PUF60-B OS=Danio r... [more]
HRP1_YEAST7.780e-1534.81Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
ELV1B_XENLA7.780e-1533.97ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ROC4_NICSY1.016e-1431.9031 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
SXL_DROME1.327e-1435.71Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
ELAV1_MOUSE1.327e-1434.62ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
PABPX_ARATH1.733e-1433.33Probable polyadenylate-binding protein At2g36660 O... [more]

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Properties
Property NameValue
Genbank descriptionC34008E12EF PostHarvC1 Citrus clementina cDNA clone C34008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930534 ID=FC930534; Name=FC930534; organism=Citrus clementina; type=EST; length=724bp
TTCTTAAACATTTAATAAACTCTTGTGTTTTTGTTTCTTTATATTCTTTC
AGGTTACTGAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTT
GTTAATGTGTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATA
CGGATTTGTAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGG
TGCTGAATATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCA
TCCCAAGACAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAA
CCTTGACCCAGATGTGGATGAGAAACTACTATGTGATACATTCAGTGCGT
TTGGAGTCATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGA
AATTCTCGTGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGA
TGCAGCTATTGAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTA
CTGTCTCATATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACT
CCGGCAGAGAGAATTTTGGCGGCAAACAATCCGAGTTCCCAGAAGAGTAG
GCCCCACACTTTATTTGCGAGTGGACCTCCATCACTACAGAATGCTCCTC
AGGCCAATGGTACTGTTGGTGGACCAGTGCCTCCACGCCCATATGCAAAT
GGTGCTGCTTCANGCCCAATTTCA
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