FC930534
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15 Identity = 54/156 (34.62%), Postives = 85/156 (54.49%), Query Frame = 2 Query: 53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 514 +T++ L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D FS FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15 Identity = 59/190 (31.05%), Postives = 90/190 (47.37%), Query Frame = 2 Query: 53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLF 616 +T+ L+ LF GP+ + +D T GY FV+F SE D+ AIKVLN I + K ++V+ A +S+ NL++ NL + + L F +G IV I+RD TG RG F+ Y+ E + AI A+N ++ ++V A + H + +AN P PH F Sbjct: 138 MTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAQEHGKAKAAHFMSQIGVPSANAPPPPPPPPHMAF 325
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 59/192 (30.73%), Postives = 92/192 (47.92%), Query Frame = 2 Query: 47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK---------------------------------SLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523 F V L LF +AG V V V D++T +G+GFV ++E+ + A + N ++ G+ IRVN K S+D +++GNL VD+ L + FS G +V + K++ D D+G SRGFGF++Y S + + AI+++NG L R I VS A ++ Sbjct: 96 FSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV-DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PU60B_DANRE (Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15 Identity = 47/163 (28.83%), Postives = 87/163 (53.37%), Query Frame = 2 Query: 41 IFFQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL----------FIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 484 I++++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N + L G+ I+V + ++ + L ++ ++ PD+ + + F AFG I + + R+P TG +GFGFI Y+ ++S A+ +MN GQYL Sbjct: 93 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAYNRIYVASIHPDLSDDDIKSVFEAFGKI-KSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMNLFDLGGQYL 254
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15 Identity = 47/135 (34.81%), Postives = 74/135 (54.81%), Query Frame = 2 Query: 47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 451 + TE+ L E F + G V ++ + KD T +G+GF+ F D +K +++ GK I +A + D +F+G + PDV K + FS +G I+ + ++M D DTG SRGFGF++YDS +A D Sbjct: 168 WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDPKRAIP-RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLMLDKDTGQSRGFGFVTYDSADAVD 298
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15 Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 2 Query: 53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 514 +T++ L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A +++ ANL+I L + +K + D F FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A Sbjct: 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.016e-14 Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 2 Query: 47 FQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 514 + V E L LF QAG V V +R T+ +G+GFV + E+A+ A+++ N + G+ + VNKA+ + ++ + +++GN+ +D+ L FS G +V + +++ D +TG SRGFGF++ S AI ++GQ L R I V+ A Sbjct: 145 YDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVV-SARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14 Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 2 Query: 53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 472 +T+ L+ LF GP+ + +D T GY FV+F SE D+ AIKVLN I + K ++V+ A +S+ NL++ NL + + L F +G IV I+RD TG RG F+ Y+ E + AI A+N Sbjct: 136 MTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIV-QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14 Identity = 54/156 (34.62%), Postives = 84/156 (53.85%), Query Frame = 2 Query: 53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 514 +T+E L LF G V + + +D+V GYGFV + + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D FS FG I+ N +++ D TG SRG FI +D ++ AI + G + ITV +A Sbjct: 31 MTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGHKPPGSSEPITVKFA 184
BLAST of FC930534 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14 Identity = 53/159 (33.33%), Postives = 86/159 (54.09%), Query Frame = 2 Query: 53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523 VTE +L++ F + + +V + KD + YG+ F S +DA+ AI+ N L GK IRV + + D + VG N+F+ NL V +L D F FG IV+ + + G SRG+GF+ ++ +A+ AAI+ +N + +++I V KK Sbjct: 35 VTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCK--VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190 HSP 2 Score: 78.9518 bits (193), Expect = 2.956e-14 Identity = 61/204 (29.90%), Postives = 102/204 (50.00%), Query Frame = 2 Query: 53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGERHGTPAERILAANNPSSQKSRPHT 610 V+E+LL E F + G +V++ + KD L +GY FV F + EDA A + +N K K + V +A +++K + +N+++ N++ V E+ L FS G I T+ K+M D + G S+GFGF+ + + E + A++ +GQ + + V+ A KK D K + R+ A + SS P T Sbjct: 212 VSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGT 412 HSP 3 Score: 70.8626 bits (172), Expect = 8.051e-12 Identity = 54/160 (33.75%), Postives = 84/160 (52.50%), Query Frame = 2 Query: 53 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLCDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 523 VT +L ++F + G +V+ V +GYGFV+F E+ A AI+ LN + K I V K + K + NL++ NLD DV E LL + F+ FG IV + I +D + RG+ F+++D+ E + A E +NG ++ + V A KK Sbjct: 123 VTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV-SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279 The following BLAST results are available for this feature:
BLAST of FC930534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 135
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930534 ID=FC930534; Name=FC930534; organism=Citrus clementina; type=EST; length=724bpback to top |