FC930539

Overview
NameFC930539
Unique NameFC930539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.903e-37
Identity = 74/170 (43.53%), Postives = 112/170 (65.88%), Query Frame = 2
Query:  215 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            +  M + EAL +A+DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLD PI E  FTG+ +GAA  GL+P+VE M   F + A + I N+ +   Y S G  ++P+V RGP G    + A+HSQ   + + S+PGL++++  ++ +A+GLLK+AI +  P++F
Sbjct:    1 MSMMFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNIPVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILF 170          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.364e-35
Identity = 74/163 (45.40%), Postives = 104/163 (63.80%), Query Frame = 2
Query:  236 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            EALN A+DEEM+ + KV L+GE++G Y G+YK+++ L  KYG  RV+DTPI E  F G  +GAA  GL  VVE M   F + A   I N+    +  S G   +PIV RGP G    +GA+HSQ    ++ SVPGL++++  +  +A+GLLK+AIR  +P+ F
Sbjct:    8 EALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIPIVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFF 170          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.781e-35
Identity = 75/163 (46.01%), Postives = 105/163 (64.42%), Query Frame = 2
Query:  236 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            EAL  A+DEEM  + +V L+GE++G Y G+YK+++GL  KYG  RV+DTPI E  F G  VGAA  GL PVVE M   F + A   I N+       S G   VP+V RGP G    +GA+HSQ   +++ SVPGL++++  +  +A+GLLK+AIR  +P++F
Sbjct:    8 EALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVPMVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILF 170          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32
Identity = 71/179 (39.66%), Postives = 107/179 (59.78%), Query Frame = 2
Query:  218 KQMMVREALNSALDEEMSADPKVFLMGEEV-------GE---YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            +++ ++ A+N A+D+EM+ DP V ++GE++       GE   + G   ++KGL  K+G +R+LDTP++E+ + G  +GAA  G++P+ E M  +F     D I N AAK  YM  G+   P+V R   GA     AQHSQ     +  +PGLKV+ P +  D +GLL  AIRD DPV+F
Sbjct:    3 RKLSIKLAINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHG-DRLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAETPVVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIF 180          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.148e-32
Identity = 68/163 (41.72%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  236 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            EA+N A+D+ M  D  + + GE+ G   G ++++ GL +KYG  RV DTPI E+   G  VG A  GLKP+ E     F       ++  AA+    S GQ +VP+V R P+G        HS+     + S+PGLKV++P +  DA+GLL AAI DPDPVVF
Sbjct:    8 EAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTVPMVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVF 170          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 71/163 (43.56%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  236 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            EAL +A+D  +  DP V L G++ G   G ++ +KGL +KYG ERV D PI EA   GIGVGAA  GLKP+VE     FS  A+  I   AA+    S G  + PI+ R P G        HS+   A Y  + GLK + P +  D +GL  AA+  PDPVVF
Sbjct:   11 EALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCPIIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVF 173          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 71/163 (43.56%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  236 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            EALN+A+D  +  D  V L G++ G   G ++ +KGL +KYG ERV D PI E    GIGVGAA  GLKP+VE     FS  A+  I   AA+    S G  + P+V R P G        HS+   A YA + GLK + P +  D +GL  AAI  PDPV+F
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIF 172          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 68/173 (39.31%), Postives = 99/173 (57.23%), Query Frame = 2
Query:  206 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            +  V  M + +AL SA+D  +  D  V + G++VG + G ++ ++GL +KYG  RV D PI+E+G  G  VG   YGL+PVVE    ++   A D +I+ AA+  Y S+G   VP+  R P G     G  HSQ   A +  V GL+ + P +  DA+GLL A I + DPV+F
Sbjct:   11 AQTVTSMTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDFIVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIF 183          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 72/175 (41.14%), Postives = 97/175 (55.43%), Query Frame = 2
Query:  236 EALNSALDEEMSADPKVFLMGEEVG------------EYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            +A+N A+   M  D  V L+GE+V              + G   ++KGL++++G  RVLDTPI+EAG+ G  + AA  GL+P+ E M  +F     D +IN  AK  YM  G+  VPI  R   GA     AQHSQ     + S+PGLK + P +  DA+GLL AAI D DPV F
Sbjct:    9 DAINEAMKLAMRKDENVLLIGEDVAGGAAVDHLQDDEAWGGVLGVTKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGKAQVPITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFF 183          
BLAST of FC930539 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 62/170 (36.47%), Postives = 99/170 (58.24%), Query Frame = 2
Query:  215 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 724
            V+ + + +ALN+ L + + ADPKV ++GE+VG   G +++++GL  ++G  RV+DTP+ EAG  G  +G A  G +PVVE     F     D I    AK     SG +S+P+V R P+G   G    H +   A++A   GL++++P +  DA  +++ AI   DPV+F
Sbjct:   14 VQSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSMPVVIRIPHGGHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIF 183          
The following BLAST results are available for this feature:
BLAST of FC930539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CYACA1.903e-3743.53Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI1.364e-3545.40Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT1.781e-3546.01Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH4.106e-3239.66Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_ACHLA9.148e-3241.72Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN1.725e-3043.56Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCGE8.562e-3043.56Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEAE8.562e-3039.312-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ACOB_BACSU1.118e-2941.14Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_LEIXX1.907e-2936.47Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34008F05EF PostHarvC1 Citrus clementina cDNA clone C34008F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930539 ID=FC930539; Name=FC930539; organism=Citrus clementina; type=EST; length=725bp
GATTCGTGCTCTTCGTGTGGGCTGTGCGTTGCAACTTTCAACCTATTTCC
CTCTCCACGGCGATCGGATCGCTGATAACTTTCACTTCTGGATTTTCATT
GAAACAGAGTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGG
AGGAGGTTCTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAA
ACTACTCATCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCT
GCTCTTGATGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGA
AGAGGTTGGGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGG
AGAAATATGGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGT
TTTACTGGGATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGT
GGAATTCATGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTA
ATTCTGCTGCAAAATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCT
ATTGTCTTCAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACA
CTCTCAATGTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTAC
TGAGCCCATACAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATA
AGGGATCCGGATCCTGTTGTTTTTC
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