FC930569

Overview
NameFC930569
Unique NameFC930569
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: PTC_STRRT (Putrescine carbamoyltransferase OS=Streptococcus ratti GN=ptcA PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 79/167 (47.31%), Postives = 112/167 (67.07%), Query Frame = 2
Query:  197 EQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNT*C 688
            ++TD++   DF K  ++K++D + ++KA +K+G    L  + K++ MIF + S RTRVSFET  S LGGHA YL P  IQ+G  E   D + VL R +DI+MARV  HQ ++DLA+ A++PVING++DYNHP Q + D  T+IEH+    +LE  KVV+VGD    C
Sbjct:    3 KKTDYITTEDFSKEELLKLVDLSLKIKACIKNGYYPPL-LEHKSLGMIFQQTSTRTRVSFETAMSQLGGHAQYLAPGQIQLGGHETIEDTSTVLSRLDDILMARVERHQSVVDLARCASIPVINGMSDYNHPTQELGDLCTMIEHLPAGKKLEDCKVVFVGDATQVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: PTC_STRMU (Putrescine carbamoyltransferase OS=Streptococcus mutans GN=ptcA PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 79/167 (47.31%), Postives = 112/167 (67.07%), Query Frame = 2
Query:  197 EQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNT*C 688
            ++TD++   DF K  ++K++D + ++KA +K+G    L  + K++ MIF + S RTRVSFET  S LGGHA YL P  IQ+G  E   D + VL R +DI+MARV  HQ ++DLA+ A++PVING++DYNHP Q + D  T+IEH+    +LE  KVV+VGD    C
Sbjct:    3 KKTDYITTEDFSKEELLKLVDLSLKIKACIKNGYYPPL-LEHKSLGMIFQQTSTRTRVSFETAMSQLGGHAQYLAPGQIQLGGHETIEDTSTVLSRLDDILMARVERHQSVVDLARCASIPVINGMSDYNHPTQELGDLCTMIEHLPAGKKLEDCKVVFVGDATQVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_ACIAD (Ornithine carbamoyltransferase OS=Acinetobacter sp. (strain ADP1) GN=argF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.036e-35
Identity = 75/160 (46.88%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            FL + D     +  ILDRA+E+K   +  ++ + PFKGK + MIF K S RTR+SFE G    GG AI+L P D Q+G+ E   D+ARV+    DI+M R FGH  +   A ++ VPVINGLTD +HPCQ++AD  T  EH G ++G  V ++GDGN  C
Sbjct:    6 FLTLRDLSSLELNSILDRASELKRQ-QHANQVYQPFKGKVLGMIFEKSSTRTRISFEAGICQFGGSAIFLSPRDTQLGRGEPIEDSARVISSMLDIVMIRTFGHNIVERFASFSKVPVINGLTDDHHPCQLLADLQTYQEHRGSIKGKTVAWIGDGNNMC 164          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_PSYWF (Ornithine carbamoyltransferase OS=Psychrobacter sp. (strain PRwf-1) GN=argF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.767e-35
Identity = 73/161 (45.34%), Postives = 104/161 (64.60%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*CT 691
            FL + D   A +  ++ RA+E++ +  +G+  + PF G+T+ MIF K S RTR+SFETG    GGHAI+L P D Q+G+ E   D+ARV+    DIIM R F H+ +   A+Y++VP+IN LTD  HPCQ++AD  T  EH G ++   V +VGDGN  C+
Sbjct:    6 FLTLLDLSPAELEALIKRASELRKMQHAGE-VYQPFVGRTLGMIFEKSSTRTRISFETGMGQFGGHAIFLSPKDTQLGRGEPIEDSARVISSMVDIIMIRTFEHEKVEKFAQYSSVPIINALTDDFHPCQLLADMQTFYEHRGSIKDKIVTWVGDGNNMCS 165          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_METHJ (Ornithine carbamoyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=argF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.014e-35
Identity = 74/162 (45.68%), Postives = 105/162 (64.81%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*CT 691
            DF+ I D  +  +  ++  A ++K   + G ++ +    KT+ MIF K S RTR+SFE G   LGGHA++L P D+Q+G+ E  RD ARV+ R+   IM R   H ++L+LA +A +PVINGL+D  HPCQI+AD +TI E + R EG KV ++GDGN  CT
Sbjct:    4 DFISILDISREELANLIAHARKLKEERRVGIQTPV-LAHKTLGMIFEKSSTRTRISFEAGMFELGGHALFLNPKDMQLGRGEAIRDTARVMSRFVSAIMIRANRHDEVLELAAHADIPVINGLSDREHPCQILADIMTIEERLFRTEGVKVAWIGDGNNVCT 164          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_PELCD (Ornithine carbamoyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=argF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.937e-35
Identity = 73/158 (46.20%), Postives = 102/158 (64.56%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            DFL ++D+    +  +   AA++KA  K+G++  L  KGKT+ M+F K S RTRVSFE G   LGGHA++L     QMG+ E  +D  RV+ RY D IM R F  + + +LA+++T+P+INGLTD  HPCQ+MAD LT+IEH          ++GDGN
Sbjct:    4 DFLCLTDWSLEELENLFTLAADLKAKQKAGEQHHL-LKGKTLGMLFEKSSTRTRVSFEVGMYQLGGHALFLSSGSTQMGRGEPIKDTGRVMSRYVDGIMIRTFSQEGVEELAQWSTIPIINGLTDMYHPCQVMADLLTVIEHKKNYRDLTYCWIGDGN 160          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_METAC (Ornithine carbamoyltransferase OS=Methanosarcina acetivorans GN=argF PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 77/161 (47.83%), Postives = 102/161 (63.35%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            D L I+D  K  I ++L+ AA++KA  K+G+ +    K K++ MIF K S RTRVSFE   +  GGHA+YL   DIQ+G+ E   D AR L  Y   +MARV  H  +  LAKY+T+PVIN L+D  HPCQI+ D +TI+E   + EG K  +VGDGN  C
Sbjct:    4 DVLSITDLSKEEIYELLESAADLKAKRKAGESTEY-LKNKSLGMIFEKSSTRTRVSFEVAMTDFGGHALYLNSRDIQVGRGETIEDTARTLSGYLHGLMARVMSHDTVEKLAKYSTMPVINALSDREHPCQILGDFMTIMEFKKKFEGLKFAWVGDGNNVC 163          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_CHLTE (Ornithine carbamoyltransferase OS=Chlorobium tepidum GN=argF PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 79/164 (48.17%), Postives = 108/164 (65.85%), Query Frame = 2
Query:  194 AEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRS--FLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            +++ DFL  +  D A I+++ D +  +K   ++   S  F P + KT++MIF KPS+RTRVSFE G   LGGHAI L    I +G+RE   D AR+L RYND I+AR+  H+ I  LAK+A +PVIN LTD +HPCQ++ADA T+ E     +  KVV+VGDGN
Sbjct:   10 SKKRDFLGFTGLDAAKIIELFDYSLFIKQQRETNRNSDEFRPIRHKTVAMIFNKPSLRTRVSFELGVYELGGHAISLEGKSIGVGERESIEDIARLLSRYNDAIVARLHEHEIIETLAKHADIPVINALTDLSHPCQVLADAFTLYEKGLWRDDIKVVFVGDGN 173          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_SYNAS (Ornithine carbamoyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=argF PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 76/158 (48.10%), Postives = 101/158 (63.92%), Query Frame = 2
Query:  206 DFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            D L I D +      I ++A  +K++ + G  ++ P KGKT+ MIF K S RTR+SFE G   LGG A++L   D Q+G+ E   D+AR++ RY + IM R F H  I + A +AT+PVINGLTD  HPCQI++D  TIIE  G  E  K+VYVGDGN
Sbjct:    4 DLLSIYDLEAGDFKAIFEKARHLKSVHEQGV-AYTPLKGKTLGMIFDKSSTRTRISFEVGMYQLGGLALFLSNRDTQLGRGETVADSARIMSRYLNGIMIRTFSHLIIEEFAAHATIPVINGLTDLLHPCQILSDLFTIIEKKGSYERLKIVYVGDGN 160          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_METS3 (Ornithine carbamoyltransferase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=argF PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.496e-34
Identity = 76/162 (46.91%), Postives = 104/162 (64.20%), Query Frame = 2
Query:  203 TDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            ++ L + D  K  ++ IL+ A       K G     P  GK+++MIF K S RTRVSF+ G   LGG A++L   ++QMG+ E   D A+VL R+ D IM R   H D+++LAKY+ VPVI+GLT+  HPCQ +AD LTI EH+G+LEG K+ +VGDGN  C
Sbjct:    2 SNLLSVCDI-KDEVLDILELAKN----FKEGKMEEKPLAGKSLAMIFQKSSTRTRVSFDVGMYQLGGQALFLSSSELQMGRGEPIPDTAKVLSRFVDGIMIRAIEHDDVVELAKYSDVPVISGLTNLEHPCQALADMLTIQEHLGKLEGKKLCFVGDGNNVC 158          
The following BLAST results are available for this feature:
BLAST of FC930569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 498
Match NameE-valueIdentityDescription
PTC_STRRT2.087e-3647.31Putrescine carbamoyltransferase OS=Streptococcus r... [more]
PTC_STRMU2.087e-3647.31Putrescine carbamoyltransferase OS=Streptococcus m... [more]
OTC_ACIAD1.036e-3546.88Ornithine carbamoyltransferase OS=Acinetobacter sp... [more]
OTC_PSYWF1.767e-3545.34Ornithine carbamoyltransferase OS=Psychrobacter sp... [more]
OTC_METHJ3.014e-3545.68Ornithine carbamoyltransferase OS=Methanospirillum... [more]
OTC_PELCD3.937e-3546.20Ornithine carbamoyltransferase OS=Pelobacter carbi... [more]
OTC_METAC6.715e-3547.83Ornithine carbamoyltransferase OS=Methanosarcina a... [more]
OTC_CHLTE6.715e-3548.17Ornithine carbamoyltransferase OS=Chlorobium tepid... [more]
OTC_SYNAS1.496e-3448.10Ornithine carbamoyltransferase OS=Syntrophus acidi... [more]
OTC_METS31.496e-3446.91Ornithine carbamoyltransferase OS=Methanobrevibact... [more]

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Properties
Property NameValue
Genbank descriptionC34008H11EF PostHarvC1 Citrus clementina cDNA clone C34008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930569 ID=FC930569; Name=FC930569; organism=Citrus clementina; type=EST; length=722bp
ATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTTTCT
ACGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCGTCT
GCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGCATC
CTCGGCCACGTCAGCTCCTAATTCCATCCATGGCAAACCAAAAGCAGAGC
AGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAGTGAAG
ATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGATAG
GTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCTAAGC
CATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTGGGA
GGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAGAGA
GGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTATTA
TGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATATGCA
ACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCAAAT
AATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAGGAA
CCAAGGTTGTCTATGTTGGAGATGGAAATACATAGTGCACTCTTGGCTTT
TGATGGCATCAGTTATTCCTTT
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