FC930569

Overview
NameFC930569
Unique NameFC930569
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BRUAB (Ornithine carbamoyltransferase OS=Brucella abortus GN=argF PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 76/157 (48.41%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            F+ +S      +  IL+ A   KA LK+G+    P+ GK ++MIF K S RTRVSF+ G   LGG  I L   ++Q+G+ E   D A+VL RY D IM R   H+ +L+LA+YATVPVIN LTD  HPCQIMAD LT  EH G ++G    ++GDGN
Sbjct:   10 FIDLSTVPATELRAILEDAKARKARLKAGEVE-RPYAGKVLAMIFEKLSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGN 165          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BRUA2 (Ornithine carbamoyltransferase OS=Brucella abortus (strain 2308) GN=arcB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 76/157 (48.41%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            F+ +S      +  IL+ A   KA LK+G+    P+ GK ++MIF K S RTRVSF+ G   LGG  I L   ++Q+G+ E   D A+VL RY D IM R   H+ +L+LA+YATVPVIN LTD  HPCQIMAD LT  EH G ++G    ++GDGN
Sbjct:   10 FIDLSTVPATELRAILEDAKARKARLKAGEVE-RPYAGKVLAMIFEKLSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGN 165          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BACCZ (Ornithine carbamoyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=argF PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 72/167 (43.11%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            PK    D L + +  +  I+ +++ A  +K      ++     +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL +Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E V   +G K+ YVGDGN  C
Sbjct:    7 PKLNTKDLLTLEELTQEEIISLIEFAIYLK-----NNKQEPLLQGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVSDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEEVNTFKGIKLAYVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_RALSO (Ornithine carbamoyltransferase OS=Ralstonia solanacearum GN=argF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 73/164 (44.51%), Postives = 102/164 (62.20%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            P ++   +L   DF       +LDR+  +KA  K+ + ++ P   +T++MIF K S RTR+SFE G   LGGHA++L   D Q+G+ E   DAA+V+ R  DIIM R FG + I   A ++ VPVINGLT+  HPCQ++AD  T IEH G ++G  V +VGD N
Sbjct:    3 PPSKIKHYLQFKDFSLEEYAYLLDRSRILKAKFKNYE-TWHPLHDRTLAMIFEKNSTRTRLSFEAGIHQLGGHAVFLNTRDSQLGRGEPIEDAAQVISRMTDIIMIRTFGQEIIERFATHSRVPVINGLTNEYHPCQVLADIFTFIEHRGPIQGKTVTWVGDAN 165          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_NITOC (Ornithine carbamoyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=argF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.209e-33
Identity = 71/160 (44.38%), Postives = 98/160 (61.25%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            FL + D     I +++ RA ++KAL + G + + P K + + M+F K S RTRVSFE G   LGG+A++L P D Q+G+ E   D ARVL R  D +M R F H  +   + Y+ VPVIN LTD  HPCQ++AD  T  EH G ++G  V ++GDGN  C
Sbjct:    6 FLTLFDLPADEIRQLVRRAIDLKALQRQG-KIYEPLKNQVLGMLFEKSSTRTRVSFEVGMIQLGGNAVFLSPRDTQLGRGEPLEDTARVLSRMVDCLMVRTFSHSMLEHFSAYSQVPVINALTDSYHPCQLLADIQTYFEHRGDIQGRTVAWIGDGNNMC 164          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_CAMFF (Ornithine carbamoyltransferase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=argF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.209e-33
Identity = 78/158 (49.37%), Postives = 106/158 (67.09%), Query Frame = 2
Query:  209 FLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPF-KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGN 679
            FL ++D DK  I+ IL  A ++K   KS  R+++ + K +T++MIF K S RTRVSFE G   LGG  ++L   DIQ+G+ E  +D ARVL R  D+IMARV+   D+ +LAK++ VPVINGL+D  HP Q+M+D LT+ E    L+  KV YVGDGN
Sbjct:    4 FLTLNDLDKNEILDILSLAKDIKKEAKS--RNYISYLKDQTLAMIFEKSSTRTRVSFEVGIHQLGGKGLFLSSRDIQLGRGEPVKDTARVLGRMVDMIMARVYKQSDLEELAKFSGVPVINGLSDDFHPVQLMSDLLTLSELGLNLQTMKVAYVGDGN 159          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_AERPE (Ornithine carbamoyltransferase OS=Aeropyrum pernix GN=argF PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.209e-33
Identity = 66/155 (42.58%), Postives = 102/155 (65.81%), Query Frame = 2
Query:  212 LHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDG 676
            L ++D+    I  +++   E+K    +G+R     +G+++ ++F KPS RTR+S E   + LGGH +Y+ P + Q+G+ E   D ARVL RY D I+ARV  H+ + ++A++A++PVINGL+D  HP Q +AD  TI+E  GRLEG K+ +VGDG
Sbjct:   12 LWLADYTGEEIRHMVELTLEMKRRYYAGERVIPVLRGRSVGLLFEKPSTRTRISLEVAVAQLGGHTVYMTPSETQLGRGETVADTARVLSRYLDAIVARVRSHKTLEEMARHASIPVINGLSDLTHPLQAIADMATILEKKGRLEGVKLAFVGDG 166          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BACC3 (Ornithine carbamoyltransferase OS=Bacillus cereus (strain 03BB102) GN=arcB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.072e-32
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            PK    D L + +  +  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL  Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGN  C
Sbjct:    7 PKLNTKDLLTLEELTQEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BACAN (Ornithine carbamoyltransferase OS=Bacillus anthracis GN=argF PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.072e-32
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            PK    D L + +  +  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL  Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGN  C
Sbjct:    7 PKLNTKDLLTLEELTQEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 168          
BLAST of FC930569 vs. ExPASy Swiss-Prot
Match: OTC_BACAC (Ornithine carbamoyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=arcB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.072e-32
Identity = 73/167 (43.71%), Postives = 101/167 (60.48%), Query Frame = 2
Query:  188 PKAEQTDFLHISDFDKATIVKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNT*C 688
            PK    D L + +  +  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL  Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGN  C
Sbjct:    7 PKLNTKDLLTLEELTQEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVC 168          
The following BLAST results are available for this feature:
BLAST of FC930569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 498
Match NameE-valueIdentityDescription
OTC_BRUAB3.685e-3348.41Ornithine carbamoyltransferase OS=Brucella abortus... [more]
OTC_BRUA23.685e-3348.41Ornithine carbamoyltransferase OS=Brucella abortus... [more]
OTC_BACCZ4.812e-3343.11Ornithine carbamoyltransferase OS=Bacillus cereus ... [more]
OTC_RALSO6.285e-3344.51Ornithine carbamoyltransferase OS=Ralstonia solana... [more]
OTC_NITOC8.209e-3344.38Ornithine carbamoyltransferase OS=Nitrosococcus oc... [more]
OTC_CAMFF8.209e-3349.37Ornithine carbamoyltransferase OS=Campylobacter fe... [more]
OTC_AERPE8.209e-3342.58Ornithine carbamoyltransferase OS=Aeropyrum pernix... [more]
OTC_BACC31.072e-3243.71Ornithine carbamoyltransferase OS=Bacillus cereus ... [more]
OTC_BACAN1.072e-3243.71Ornithine carbamoyltransferase OS=Bacillus anthrac... [more]
OTC_BACAC1.072e-3243.71Ornithine carbamoyltransferase OS=Bacillus anthrac... [more]

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Properties
Property NameValue
Genbank descriptionC34008H11EF PostHarvC1 Citrus clementina cDNA clone C34008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930569 ID=FC930569; Name=FC930569; organism=Citrus clementina; type=EST; length=722bp
ATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTTTCT
ACGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCGTCT
GCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGCATC
CTCGGCCACGTCAGCTCCTAATTCCATCCATGGCAAACCAAAAGCAGAGC
AGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAGTGAAG
ATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGATAG
GTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCTAAGC
CATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTGGGA
GGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAGAGA
GGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTATTA
TGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATATGCA
ACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCAAAT
AATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAGGAA
CCAAGGTTGTCTATGTTGGAGATGGAAATACATAGTGCACTCTTGGCTTT
TGATGGCATCAGTTATTCCTTT
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