FC930611

Overview
NameFC930611
Unique NameFC930611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 76/190 (40.00%), Postives = 106/190 (55.79%), Query Frame = 1
Query:   13 NEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQV-DSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPS 579
            N+ L+  AA+ S   NWV+ N+  YYPA  I+ +A GNEV+      T  +VPAM+N+  +L    L   +KVS+ I   A+ N++PPS+G F     +  +  +   L  T + L+ N YP+FAY  N   I L+YA FR     V D   GL    LFDA +DAV AA+       V+VVV+E+GWPS
Sbjct:   58 NDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWG---GDTQNIVPAMRNLGAALKAPGL-GTIKVSTSIRFDAVTNTFPPSNGVF----AQAYMTDVARLLASTGAPLLTNVYPYFAYKDNPRDIQLNYATFRPGTTTVRDPNTGLTSQCLFDAMVDAVVAALERSGAPGVRVVVSESGWPS 239          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 76/195 (38.97%), Postives = 110/195 (56.41%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            V  PN+ LS  AA  +   +WV++NI  Y P      V VGNEV       T  LVPAMKNV+ +LV   L  ++KV++ ++   L    PPS+GSF  +     + P+++FL +T++ LM N YP+ A++ N   + + YALF  + G V       Y NLFD  +DA + AM     + VK+VV+E+GWPS G
Sbjct:   58 VGAPNDVLSNLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAG---GATRNLVPAMKNVHGALVAAGL-GHIKVTTSVSQAILGVFSPPSAGSFTGEAAA-FMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFNAS-GTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWPSGG 245          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 75/194 (38.66%), Postives = 110/194 (56.70%), Query Frame = 1
Query:   10 PNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQ--VDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            PN +L + A  Q+  + WV+ N+ KY    + + ++VGNEV          L+ AM+N+  +L    L SN+KVS+   +G  +N+YPPS G FK D     L+P++ FL    S L+VN Y +F Y  N D +SL +AL + N      D  N L+Y N FDA LD+V+AA+       + VVV+E+GWP+ G
Sbjct:   81 PNGDLKRLADSQAEANTWVRDNVQKYNDV-RFKYISVGNEVKPGEPGAAA-LIQAMQNIDRALSAAGL-SNIKVSTTTFMGPSRNTYPPSRGRFK-DEYRNFLQPVIGFLVNKRSPLLVNIYTYFGYM-NRD-VSLQFALLQPNSNNEFTDPNNQLRYLNFFDANLDSVYAALEKSGGGSLDVVVSESGWPTQG 268          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 3.663e-26
Identity = 59/150 (39.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query:  148 NTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRD---NPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            ++ P L+PA++++YN+LV   L + +KVS+P A   + +++PPS   F        + P+L+FL KT S LM+N YP++ Y  N   + LD  LF     +   VD    L YTN+ DA +DA + +M  ++ +DV V+VTE+GWPS GD
Sbjct:   35 SSAPLLLPAIESLYNALVASNLHTQIKVSTPHAASIMLDTFPPSQAYFNQTW-HSIMVPLLQFLSKTGSPLMMNLYPYYVYMQNKGVVPLDNCLFEPLTPSKEMVDPNTLLHYTNVLDAMVDAAYVSMKNLNVSDVAVLVTESGWPSKGD 183          

HSP 2 Score: 23.0978 bits (48), Expect = 3.663e-26
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  630 HGNLVRRVLSGSGTPLRP 683
            + NL++ V   +GTPL P
Sbjct:  198 NSNLIKHVFDRTGTPLHP 215          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 70/186 (37.63%), Postives = 101/186 (54.30%), Query Frame = 1
Query:   22 LSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPS 579
            L   A+  S    WV+AN+S + P      +AV NEV      +T  ++PAM+NV  +L      S +KVS+ +      N+ PPS+G          L+P+L FL + +  L+ N YP+FAY  N   I L +A F      V+  NGL YTNLFDA +D+++AA+       VKVV++E+GWPS
Sbjct:   83 LPSLASSPSAAAAWVKANVSSF-PGVSFRYIAVRNEVMDSAGQST--ILPAMRNVQRALAA--AGSPIKVSTSVRFDVFNNTSPPSNGVLADK--SGFLRPILNFLARPARPLLANVYPYFAYKGNPRDIQLTFATFVPGSTTVND-NGLTYTNLFDAMVDSIYAALEKAGTPGVKVVISESGWPS 260          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 69/193 (35.75%), Postives = 104/193 (53.89%), Query Frame = 1
Query:   10 PNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSA-ISYNDVKVVVTETGWPSVG 585
            PN +L+  A+D S    WVQ+N+     +     +AVGNEV       T  ++PAM+N+  +L    L  ++KVS+ +     Q  +PPS G+F    + P+     ++L+ T + L+ N YP+F+Y  N  +I L YALF  +PG V       Y NLFDA +D   +A+       +V VVV+E+GWPS G
Sbjct:   84 PNTDLASLASDPSAAAAWVQSNVQASRRSA-CRYIAVGNEVSG---GDTGSILPAMQNLNAALANAGLGGSIKVSTAVQSDVTQG-FPPSQGTFSQGYMAPSR----QYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALF-TSPGTVVQDGSNAYQNLFDALVDTFVSALEENAGAGNVPVVVSESGWPSAG 266          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.872e-23
Identity = 67/203 (33.00%), Postives = 112/203 (55.17%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYY--PATKIEAVAVGNEVFADPKNTT--PFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQN--SYP-PSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            VA PN++L K         +WV+ N+++Y       I  VAVGNE F    N +      PA+ N+ N+L +  L ++VK + P+      +  S P PS+G F+ D+I   +  +++FL K ++ + +N YPF +   N D   L+YA F  +  +  + NG+ YTN+FDA  D + +++ A+ + D+ ++V E GWP+ GD
Sbjct:   76 VAIPNDQL-KVMTSYDRAKDWVRKNVTRYNFDGGVNITFVAVGNEPFLKSYNGSFINLTFPALANIQNALNEAGLGNSVKATVPLNADVYDSPASNPVPSAGRFRPDIIGQ-MTQIVDFLGKNNAPITINIYPFLSLYGN-DDFPLNYAFF--DGAEPINDNGIDYTNVFDANFDTLVSSLKAVGHGDMPIIVGEVGWPTEGD 273          

HSP 2 Score: 20.7866 bits (42), Expect = 9.872e-23
Identity = 8/18 (44.44%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  630 HGNLVRRVLSGSGTPLRP 683
            +  L+ R+ +  GTPLRP
Sbjct:  285 YNGLLPRLGTNKGTPLRP 302          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.103e-21
Identity = 67/201 (33.33%), Postives = 105/201 (52.24%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPA---TKIEAVAVGNEVFADPKNTT--PFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGA-LQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVG 585
            +   N  L    A     ++WV  N+++Y+      +IE VAVG E F         PF++ A  N+ N+LVK  L + VKV  P +  + L  S  PSSG F++DL +  ++ +L FL K  S   V   PF ++  N + ISLD++LF++       G    Y N FD   D + +A+  I +++V +VV++ GWP+ G
Sbjct:   77 IGIQNSMLKSLNASVKVAESWVHDNVTRYFNGGNRVRIEYVAVGEEPFLQSYGNQYKPFVIGAAMNIQNALVKANLANEVKVVVPSSFDSFLSESGRPSSGHFRADLNKTMIE-LLSFLTKHHSPFFVTISPFLSFHQNKN-ISLDFSLFKETAKAHKDGRKT-YRNSFDLSYDTLVSALFTIGFSEVDIVVSKIGWPTDG 274          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 64/203 (31.53%), Postives = 103/203 (50.74%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPA--TKIEAVAVGNEVFADPKN----TTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYP-PSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            V  PNE L+  A+     + WV  N+S +       I  VAVGNE F    N    +T F  PA++N+  +++K  L + VKV+ P+      +S   PS G F+++ I   +  +++FL +      VN YP+ +   N D   +DYA F  N   ++ G G  Y N+FDA  D +  A+    + ++ +++ E GWP+ GD
Sbjct:   73 VGIPNEMLATLASSLKAAEKWVAKNVSTHISTDNVNIRYVAVGNEPFLSTYNGSYLSTTF--PALRNIQIAIIKAGLQNQVKVTCPLNADVYDSSTTFPSGGDFRAN-IRDLMITIVKFLSENGGPFTVNIYPYISLYTNPD-FPVDYAFFDGNAQPLNDG-GTFYYNMFDANYDTLVHALEKNGFGNMPIIIGEIGWPTDGD 270          
BLAST of FC930611 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 59/201 (29.35%), Postives = 104/201 (51.74%), Query Frame = 1
Query:    1 VAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEA--VAVGNEVFADPKNTT--PFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQN-SYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYTNLFDAQLDAVFAAMSAISYNDVKVVVTETGWPSVGD 588
            V  PN+ L+  A   +  + WV  N+S +  +  ++   VAVGNE F    N T     +PA++N+ ++++K  L + VKV+ P+     Q+ S  PS G F+ ++ +  L  +++FL    +   +N YPF +   N     +++A F D  G   + NG  Y N+ DA  D +  ++    + ++ ++V E GWP+ GD
Sbjct:   78 VGIPNDLLAPLAGSVAAAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLKAFNGTFEGITLPALQNIQSAIIKAGLATQVKVTVPLNADVYQSASNLPSDGDFRPEIRDLMLN-IVKFLSDNGAPFTINIYPFISLY-NDPNFPVEFAFF-DGTGTPINDNGRIYDNVLDANYDTLVWSLQKNGFGNLTIIVGEVGWPTDGD 275          
The following BLAST results are available for this feature:
BLAST of FC930611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
E13A_HORVU4.624e-2840.00Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
GUB2_HORVU1.757e-2738.97Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13B_BRACM2.537e-2638.66Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E131_ARATH3.663e-2639.33Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E13C_HORVU5.653e-2637.63Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E13B_MAIZE2.011e-2335.75Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E138_ARATH9.872e-2333.00Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E139_ARATH1.103e-2133.33Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E136_ARATH1.593e-2031.53Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E135_ARATH1.142e-1829.35Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC34009D07EF PostHarvC1 Citrus clementina cDNA clone C34009D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930611 ID=FC930611; Name=FC930611; organism=Citrus clementina; type=EST; length=718bp
GTTGCGTTCCCCAATGAGGAACTCTCCAAGGCCGCAGCTGACCAGTCATT
TACTGACAACTGGGTCCAGGCCAATATCTCCAAGTACTACCCGGCAACGA
AGATCGAGGCCGTCGCAGTGGGCAACGAAGTCTTCGCAGACCCGAAGAAC
ACGACGCCGTTTCTCGTCCCCGCCATGAAGAACGTTTACAACTCCTTGGT
TAAGTACAAGCTTGATTCTAACGTTAAAGTCTCCTCTCCTATTGCTTTAG
GTGCGTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCAAATCGGAT
CTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGTAAGACGTC
GTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTCTGCTAACG
CGGATAAGATATCTTTAGACTACGCTTTGTTTAGGGATAATCCCGGTCAA
GTGGATTCAGGTAACGGGCTGAAGTATACTAACCTTTTTGACGCCCAACT
CGACGCCGTTTTCGCTGCCATGTCAGCAATCAGTTATAACGACGTGAAGG
TTGTGGTGACGGAGACTGGATGGCCGTCTGTGGGTGACGAGAATGAGGCG
GGTGCTGGTGCGGCCAATGCCGCGGCGTACACGGGAATCTAGTACGTAGA
GTCTTGTCTGGAAGTGGGACCCCCTTGAGACCAAGGACCCACTTAACGTT
TACCTCTTCGCTTTGTTC
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