FC930721

Overview
NameFC930721
Unique NameFC930721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M1_MOUSE (AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G + + + ++  VS    + FF +  EK  D ++  PV+       + I    ++ ++  +       ++ FLHRV D F+ YF E  E +++DN V+VYELL+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLINCSGDIFLEKHWKSVVSQSVCDYFF-EAQEKAADVENVPPVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKE 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M1_HUMAN (AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G + + + ++  VS    + FF +  EK  D ++  PV+       + I    ++ ++  +       ++ FLHRV D F+ YF E  E +++DN V+VYELL+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLINCSGDIFLEKHWKSVVSQSVCDYFF-EAQEKAADVENVPPVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKE 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M1_BOVIN (AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G + + + ++  VS    + FF +  EK  D ++  PV+       + I    ++ ++  +       ++ FLHRV D F+ YF E  E +++DN V+VYELL+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLINCSGDIFLEKHWKSVVSQSVCDYFF-EAQEKAADVENVPPVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKE 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M1_CHICK (AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 44/132 (33.33%), Postives = 75/132 (56.82%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G + + + ++  VS    + FF +  EK  D ++  PV+       + I    ++ ++  +       ++ FLHRV D F+ YF E  E +++DN V+VYELL+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLINCSGDIFLEKHWKSVVSQSVCDYFF-EAQEKAIDVENVPPVISTPLHYLISIYRDKIFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSETAIKDNVVIVYELLEEMLDNGFPLATESNILKE 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2M_SCHPO (AP-2 complex subunit mu OS=Schizosaccharomyces pombe GN=apm4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 39/131 (29.77%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILS 686
            +S LF+ ++KG  L+ + +R D+     E F   ++    +   + P+V     +Y++ +H ++Y++  ++ N N   +L FL  ++    HYF +L E +++DN   ++ELLDEM+D+G  Q TE + L+
Sbjct:    2 ISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAILT---NTDYRHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGIIQTTEPDALA 129          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M1_RAT (AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=Ap3m1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G + + + ++  VS    + FF +  EK  D ++   V+       + I    ++ ++  +       ++ FLHRV D F+ YF E  E +++DN V+VYELL+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLINCSGDIFLEKHWKSVVSQSVCDYFF-EAQEKAADVENVPTVISTPHHYLISIYRDKLFFVSVIQTEVPPLFVIEFLHRVADTFQDYFGECSEAAIKDNVVIVYELLEEMLDNGFPLATESNILKE 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M2_MOUSE (AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G + + + ++  VS    + FF +  E+  +A++  PV+       L +    ++ +   +       ++ FLHRVVD F+ YF    E  ++DN VVVYE+L+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLINSSGDIFLEKHWKSVVSRSVCDYFF-EAQERATEAENVPPVIPTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPLATESNILKE 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M2_HUMAN (AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G + + + ++  VS    + FF +  E+  +A++  PV+       L +    ++ +   +       ++ FLHRVVD F+ YF    E  ++DN VVVYE+L+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLINSSGDIFLEKHWKSVVSRSVCDYFF-EAQERATEAENVPPVIPTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPLATESNILKE 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M_DICDI (AP-3 complex subunit mu OS=Dictyostelium discoideum GN=apm3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 41/133 (30.83%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYF-EELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            +S+ F++  +G +L+ + +RG ++    E F+ ++++   +  S  P++       + IQ  NVYL+   +   +   ++ FL R+ D F  YF   +   ++++NFV VY+LLDEM D G+P  TE N L E
Sbjct:    2 LSSFFIIADQGDILIEKHWRGLMNRSICEYFWDQVLQSKQNGSSVPPIISTPKYYLINIQKQNVYLLGVCQSEVSPLLVVDFLQRIYDTFVEYFGSNITSATIKENFVHVYQLLDEMADNGFPFTTELNFLKE 134          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP3M2_RAT (AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=Ap3m2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 43/132 (32.58%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G + + + ++  VS    + FF +  E+  +A++  PV+       L +    ++ +   +       ++ FLHRVVD F+ YF    E  ++DN VVVYE+L+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLINSAGDIFLEKHWKSVVSRSVCDYFF-EAQERATEAENVPPVIPTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVVVVYEVLEEMLDNGFPLATESNILKE 132          
The following BLAST results are available for this feature:
BLAST of FC930721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AP3M1_MOUSE7.259e-1633.33AP-3 complex subunit mu-1 OS=Mus musculus GN=Ap3m1... [more]
AP3M1_HUMAN7.259e-1633.33AP-3 complex subunit mu-1 OS=Homo sapiens GN=AP3M1... [more]
AP3M1_BOVIN7.259e-1633.33AP-3 complex subunit mu-1 OS=Bos taurus GN=AP3M1 P... [more]
AP3M1_CHICK2.112e-1533.33AP-3 complex subunit mu-1 OS=Gallus gallus GN=AP3M... [more]
AP2M_SCHPO4.705e-1529.77AP-2 complex subunit mu OS=Schizosaccharomyces pom... [more]
AP3M1_RAT6.145e-1532.58AP-3 complex subunit mu-1 OS=Rattus norvegicus GN=... [more]
AP3M2_MOUSE3.050e-1432.58AP-3 complex subunit mu-2 OS=Mus musculus GN=Ap3m2... [more]
AP3M2_HUMAN3.050e-1432.58AP-3 complex subunit mu-2 OS=Homo sapiens GN=AP3M2... [more]
AP3M_DICDI3.983e-1430.83AP-3 complex subunit mu OS=Dictyostelium discoideu... [more]
AP3M2_RAT3.983e-1432.58AP-3 complex subunit mu-2 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34010E12EF PostHarvC1 Citrus clementina cDNA clone C34010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930721 ID=FC930721; Name=FC930721; organism=Citrus clementina; type=EST; length=739bp
GGCTGCGCGGCTTATGTTACAGCATAGAAGTTAGAAGAAGGCAAGCAGCA
ATAAATAATAGTGAAAGATCGATCGATCTCTCTCCATTACCGTTGGTTGA
TTTAAGGAGTCTGACAGAGACAGTTTATCTTCACCACCATGCATCATCTA
AATGGAGCCACAAAATTTACAACTCCCAGATTCAGTTTCGCATGAATTGT
TGTTCTCACTTCTCAGTTAACGACTTTTATCAATTCCGTCAGATCTCTGA
TTGATCTTTAGAAGCCCTAGAAGAAGACAAAATGGCAGGTGCTGTCTCCG
CACTCTTTCTTCTAGACATAAAGGGCCGTGTTCTGGTGTGGCGCGACTAC
CGTGGTGACGTCTCTGCAAAGCAAGCCGAGCGCTTCTTCACCAAGCTCAT
CGAAAAAGATGGAGATGCACAGTCGCAGGATCCGGTTGTATACGATAATG
GAGTCTCATACTTGTTTATACAGCACTCCAATGTTTATCTTATGACAGCG
TCGAGGCAGAATTGCAATGCTGCCAGCCTTCTTTTCTTTCTACACCGCGT
AGTTGATGTCTTTAAACATTACTTTGAAGAGTTAGAGGAGGAATCGCTTA
GGGATAACTTTGTTGTTGTGTATGAGTTGCTTGATGAAATGATGGACTTT
GGTTATCCTCAATATACAGAAGCGAATATCTTAAGTGAATTTCATCAGAC
TGATGCATATAGGATGGAAAGTACTCAGAGGCCTCCTAT
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