FC930722

Overview
NameFC930722
Unique NameFC930722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIL_YARLI (Acetyl-CoA acetyltransferase OS=Yarrowia lipolytica GN=PAT1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 61/172 (35.47%), Postives = 92/172 (53.49%), Query Frame = 1
Query:  220 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQ----VNPKVEIFTQARDCL------LPMGITSENVAQRFGVTRQEQD 705
            IV A RT + K   G  K   A DL     KA ++++++   ++ + + G VL   S +A   R      GFPE+V   T+N+ CSSGL+ VA  A AIKAG  ++ +A G+ESM+ N+    G+     N K+E  +  +D L      + MG   EN  +R G+TR++QD
Sbjct:   13 IVGAARTPVGKFN-GALKSVSAIDLGITAAKAAVQRSKVPADQIDEFLFGQVLTANSGQA-PARQVVIKGGFPESVEATTINKVCSSGLKTVALAAQAIKAGDRNVIVAGGMESMS-NTPYYSGRGLVFGNQKLE-DSIVKDGLWDPYNNIHMGNCCENTNKRDGITREQQD 180          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            +VVIV   RT + ++K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++R++QD
Sbjct:    3 NVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHM--GHVPMNHGVDFHPGMSKHVAKAAGMMGLTAEMLGKLHGISREQQD 166          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            +VVIV   RT + ++K G F+ T A+DL A ++K ++ +  ++NPSE+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++R++QD
Sbjct:    3 NVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHM--GHVPMNHGVDFHPGMSKHVAKAAGMMGLTAEMLGKLHGISREQQD 166          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 54/165 (32.73%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  214 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            VVIV   RT + ++K G F+   A+DL A ++K ++ +  ++NP E+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++RQ+QD
Sbjct:    4 VVIVDCLRTPMGRSKGGAFRHQRAEDLSAHLMKGILARNPQVNPKEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDAARAIMVGDAEICLVGGVEHM--GHVPMTHGVDFHPGLSKNVAKAAGMMGLTAEMLGKLHGISRQQQD 166          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 54/165 (32.73%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  214 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            VVIV   RT + ++K G F+   A+DL A ++K ++ +  ++NP E+ DI  G V           R AA  AG P  +   TVNR C S +QA+ D A AI  G  +I +  G+E M    + +   V+    +          MG+T+E + +  G++RQ+QD
Sbjct:    4 VVIVDCLRTPMGRSKGGAFRHQRAEDLSAHLMKGILARNPQVNPKEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDAARAIMVGDAEICLVGGVEHM--GHVPMTHGVDFHPGLSKNVAKAAGMMGLTAEMLGKLHGISRQQQD 166          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 52/166 (31.33%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI     D+ I  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFIIGGVEHM--GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 51/166 (30.72%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI     D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHM--GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.870e-14
Identity = 51/166 (30.72%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI     D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHM--GHVSMMHGVDPNPHMSLHAAKASGMMGLTAEMLGKMHGITREQQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSYWF (3-ketoacyl-CoA thiolase OS=Psychrobacter sp. (strain PRwf-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.442e-14
Identity = 53/166 (31.93%), Postives = 88/166 (53.01%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKV-EIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RTA+ K+K G F++  AD + A +++A++++   + +EV DI+ G V           R     A  P+T   +TVNR C S +QA+   A  I     D+ I  G+E M    +     +NP+  + + +A +    MG+T+E + +  G+TR++QD
Sbjct:    8 DVVIVDGVRTAMGKSKNGMFRNVRADSMSAELVRALVKRNDFDTNEVEDIIWGCVNQTLEQGMNIGRNIGLLADIPKTAGGQTVNRLCGSSMQALHTAAAQIMTNQGDVFIIGGVEHMGHVGMMHGIDINPEASKHYAKASNM---MGLTAEMLGRMNGITREQQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 64/181 (35.36%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  217 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMT--------------VNSISVVGQV--NPKVEIFTQARDCLLPMGITSE--NVAQRFGVTRQEQD 705
            VIV   RT I K   G  KD  A DL A  + A ++K  + PS V  +++G VL  G+ + M  R AA  AG    VP  T+N+ C SGL A+A     I+AG +D+ +A G ESMT                 +++V  +  +   ++FT       PMG  +E  N  ++F  TRQEQD
Sbjct:    5 VIVTGARTPIGKLM-GSLKDFSASDLGAITIAAALKKANVAPSIVQYVIIGQVLTAGAGQ-MPARQAAVAAGIGWDVPALTINKMCLSGLDAIALADQLIRAGEFDVVVAGGQESMTKAPHLLMDSRSGYKYGDVTIVDHLAYDGLHDVFTNQ-----PMGALTEQRNDVEKF--TRQEQD 176          
The following BLAST results are available for this feature:
BLAST of FC930722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
THIL_YARLI1.432e-1435.47Acetyl-CoA acetyltransferase OS=Yarrowia lipolytic... [more]
FADA_VIBVY1.432e-1433.133-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_VIBVU1.432e-1433.133-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]
FADA_VIBCH1.432e-1432.733-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
FADA_VIBC31.432e-1432.733-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]
FADA_PSEU21.432e-1431.333-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSESM1.870e-1430.723-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSE141.870e-1430.723-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSYWF2.442e-1431.933-ketoacyl-CoA thiolase OS=Psychrobacter sp. (stra... [more]
THIL_MYCLE4.165e-1435.36Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]

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Properties
Property NameValue
Genbank descriptionC34010F01EF PostHarvC1 Citrus clementina cDNA clone C34010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930722 ID=FC930722; Name=FC930722; organism=Citrus clementina; type=EST; length=753bp
GTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTGAAAC
CTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTGCTTC
AACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTATTTCT
GCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATAGGAAGCCTGC
TTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCA
AGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCA
CCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTGAAGT
AGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCA
TGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCC
CTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGA
TGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTG
GATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAAC
CCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTATGGG
TATCACTTCTGAAAATGTTGCACAGAGATTTGGTGTGACACGACAAGAGC
AAGACCTGGCTGCCGTTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCA
TCT
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