FC930758

Overview
NameFC930758
Unique NameFC930758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_CHICK (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.750e-25
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 1
Query:  241 ESLTPRN-EESLVPGV----PATVAAVKNPTSKIVYDEYNHERYPPGDPS-------KRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            ES++ R+    LV G+    PA+V  V N  +   +  Y  E       S       ++ F+Y V        A   + ++ +F+ S+SAS DVLA++ +E+ LS I  G  V  KWRGKP+F+R RT+ +I     VD+  LRDPQ D +RVK PEW+++VGVCTH
Sbjct:   51 ESMSGRSARRDLVAGISLNAPASVRYVHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTH 217          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_CERAE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cercopithecus aethiops GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 62/150 (41.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  283 VPATVAAVKNPTSKIVYDEYNHERYPPGDPSK---------RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            VPA+V    + T   V D Y++ R    D +K         + F+Y V        A   + ++ +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:   72 VPASVCY--SHTDVKVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_THEGE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 61/150 (40.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:  283 VPATVAAVKNPTSKIVYDEYNHERYPPGDPSK---------RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            VPA+V    + T   V D Y++ R    D +K         + F+Y V        A   +  + +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++G+CTH
Sbjct:   72 VPASVCY--SHTDVKVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_PONPY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   + ++ +FV SMSAS DVLA+A +E+ LS I  G  +T KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNVVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_COLPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus polykomos GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            ++++F+Y V        A   +  + +FV SMSAS DVLAMA +EV LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.045e-24
Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V            + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V            + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRIL_HUMAN (Cytochrome b-c1 complex subunit Rieske-like protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 52/111 (46.85%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++IK    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  118 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTH 228          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 49/111 (44.14%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V            + ++ +F+ SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_HYLSY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Hylobates syndactylus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTAVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKRPEWVILIGVCTH 219          
The following BLAST results are available for this feature:
BLAST of FC930758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UCRI_CHICK2.750e-2538.32Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CERAE3.591e-2541.33Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_THEGE6.125e-2540.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PONPY8.000e-2546.85Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_COLPO8.000e-2547.75Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_LAGLA1.045e-2445.05Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_AOTAZ1.782e-2445.05Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRIL_HUMAN1.782e-2446.85Cytochrome b-c1 complex subunit Rieske-like protei... [more]
UCRI_SAISC2.328e-2444.14Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HYLSY3.040e-2445.95Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC34108G02EF PostHarvP1 Citrus clementina cDNA clone C34108G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930758 ID=FC930758; Name=FC930758; organism=Citrus clementina; type=EST; length=705bp
GACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTTGAAGATGTT
GAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCATCGTCATTGA
GGCCCATCGCTTCGTCTCGCAATATAATTAACGGCGCCGATTCATCGTCC
TCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTCCGGATATCT
TGGACCTCAGTTTCAACTTCCTTGCCGAGGTTTTTCTTCTGAGTCACTGA
CACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCAACAGTGGCA
GCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATACAATCATGA
ACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACTTTGTCC
TGACTGGTGGTAGGTTTGTGTACGCTTCACTCATCCGTCTACTTATCCTT
AAATTCGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGCTATGGCCTC
TCTTGAGGTTGATCTGTCCAGCATTGAGCCAGGCAGCACAGTGACTGTTA
AGTGGCGGGGCAAGCCAGTTTTCATCAGACGTCGGACTGAGGAAGATATC
AAGCTGGCCAACACTGTTGATTTGGGATCTCTTCGTGATCCTCAGCAAGA
CGCTGAGAGGGTTAAAAACCCGGAGTGGCTTGTAGTTGTTGGGGTCTGCA
CACAT
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