FC930758

Overview
NameFC930758
Unique NameFC930758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  463 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVK--NPEWLVVVGVCTH 705
            S + S DVLA++S+EVDLS+I  G TVTVKW+GKP+FI  RT ++I  A  V +  L DP++D  RVK  +  WLV +G+CTH
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTH 122          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRD-----------PQQDAERVKNP--EWLVVVGVCTH 705
            ++R F Y+   G   V A      ++     M+ S DV A+AS++VD+S +E G+ +TVKW GKPVFIRRRTE++I+    VDLG L D           P  D  R  +   EWLV++GVCTH
Sbjct:   14 TRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTH 134          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  466 MSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNP--------------------EWLVVVGVCTH 705
            M+AS DV AMAS+ VD+S++E G+ +TVKWRGKPVFIRRR E+DI+LA +V LG+LRD    AE    P                    EWLV++GVCTH
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRD--TSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTH 135          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  463 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVK--NPEWLVVVGVCTH 705
            S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A  V +  L DP+ D  RVK  +  WLV +G+CTH
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTH 122          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  463 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVK--NPEWLVVVGVCTH 705
            S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A  V +  L DP+ D  RVK  +  WLV +G+CTH
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTH 122          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 50/125 (40.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRD--------------PQQDAERVKNPEWLVVVGVCTH 705
            ++R F Y+   G   V        +   +  M+ S DV A+AS+ VD+SS+EPG  +TVK+ GKP+FIRRRTE DI+L  +V LG L D                Q+    +  EWLV+ GVCTH
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 131          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  370 PSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVK--NPEWLVVVGVCTH 705
            P++R F  FV TG          L    F+  M+     +A  A +EVDLS I  G  + V WRGKP++I  RT++ I  A  V++ SL DPQ D  RVK  + +WLVV+G+CTH
Sbjct:   10 PTRRDFL-FVATGAAAAVGGAAALW--PFISQMNPDASTIAAGAPIEVDLSPIAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTH 121          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  367 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVK--NPEWLVVVGVCTH 705
            + ++R F Y        V A+ +  +   F+  M+     +A  A +++D+S +  G  V V WRGKP+FIR RT ++I+     D+G+L DPQ D+ RVK    EWLVV   CTH
Sbjct:    8 EATRRDFLYVATAA---VGAAGVAAVAWPFITQMNPDAATIAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTH 120          
The following BLAST results are available for this feature:
BLAST of FC930758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UCRI_RICPR2.493e-1853.01Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE3.256e-1841.94Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOCA4.252e-1851.00Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE5.553e-1854.22Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN5.553e-1854.22Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH1.512e-1540.00Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA3.369e-1541.74Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI1.084e-1337.07Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionC34108G02EF PostHarvP1 Citrus clementina cDNA clone C34108G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930758 ID=FC930758; Name=FC930758; organism=Citrus clementina; type=EST; length=705bp
GACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTTGAAGATGTT
GAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCATCGTCATTGA
GGCCCATCGCTTCGTCTCGCAATATAATTAACGGCGCCGATTCATCGTCC
TCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTCCGGATATCT
TGGACCTCAGTTTCAACTTCCTTGCCGAGGTTTTTCTTCTGAGTCACTGA
CACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCAACAGTGGCA
GCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATACAATCATGA
ACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACTTTGTCC
TGACTGGTGGTAGGTTTGTGTACGCTTCACTCATCCGTCTACTTATCCTT
AAATTCGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGCTATGGCCTC
TCTTGAGGTTGATCTGTCCAGCATTGAGCCAGGCAGCACAGTGACTGTTA
AGTGGCGGGGCAAGCCAGTTTTCATCAGACGTCGGACTGAGGAAGATATC
AAGCTGGCCAACACTGTTGATTTGGGATCTCTTCGTGATCCTCAGCAAGA
CGCTGAGAGGGTTAAAAACCCGGAGTGGCTTGTAGTTGTTGGGGTCTGCA
CACAT
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