FC930760

Overview
NameFC930760
Unique NameFC930760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:26..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSF (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain FRC-32) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG +   +V+ L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CV
Sbjct:   18 DIYSRLLKDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICV 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_PELPD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter propionicus (strain DSM 2379) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K RI++LG      V  LI+A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CV
Sbjct:   18 DIYSRLLKERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLYINSPG--------GVVTSGMAIYDTMRYIKAPVSTICV 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSM (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain M21) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG     +V  L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CV
Sbjct:   18 DIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICV 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_GEOBB (ATP-dependent Clp protease proteolytic subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG     +V  L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CV
Sbjct:   18 DIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICV 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_DESRM (ATP-dependent Clp protease proteolytic subunit OS=Desulfotomaculum reducens (strain MI-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI+++G      +  L++A+FL+L+ ED EK I+LYINS G        G  T   AIYD M Y+KP + T+C+
Sbjct:   20 DIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPG--------GVVTAGLAIYDTMQYIKPAVSTICL 94          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_SYNAS (ATP-dependent Clp protease proteolytic subunit OS=Syntrophus aciditrophicus (strain SB) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG      V  LI+A+ L+L+ ED +K I+ Y+N+ G        G+ +   AIYD M Y+KPP+ T+CV
Sbjct:   19 DIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFFYLNTPG--------GHISSGMAIYDTMRYIKPPVATVCV 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_FUSNN (ATP-dependent Clp protease proteolytic subunit OS=Fusobacterium nucleatum subsp. nucleatum GN=clpP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI+++G +   +V   I+A+ LYL+ ED EK I +YINS G        G  T+  AIYD M Y+KP + T+CV
Sbjct:   18 DIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYINSPG--------GSVTDGMAIYDTMNYIKPDVQTVCV 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNE7 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  270 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            P +   +P +S   W     D+ + L   RI++LG      +   I+A+ LYL  ED+ KPIYLYINS G        G  T   AIYD M Y+K P+ T+C+
Sbjct:    6 PSVPYRLPGSSFERWI----DIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPG--------GSVTAGMAIYDTMQYIKSPVITICL 96          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNP6 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  270 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            P +   +P +S   W     D+ + L   RI++LG      +   I+A+ LYL  ED+ KPIYLYINS G        G  T   AIYD M Y+K P+ T+C+
Sbjct:    6 PSVPYRLPGSSFERWI----DIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPG--------GSVTAGMAIYDTMQYIKSPVITICL 96          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_THETN (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter tengcongensis GN=clpP PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 37/83 (44.58%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+KP + TLCV
Sbjct:   19 DIFSRLLKDRIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPG--------GSITAGLAIYDTMQYIKPDVVTLCV 93          
The following BLAST results are available for this feature:
BLAST of FC930760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP_GEOSF3.635e-1243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELPD6.201e-1244.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSM6.201e-1243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOBB6.201e-1243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESRM6.201e-1242.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNAS8.099e-1240.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FUSNN8.099e-1243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNE78.099e-1237.86ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNP68.099e-1237.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THETN1.058e-1144.58ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34108G04EF PostHarvP1 Citrus clementina cDNA clone C34108G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930760 ID=FC930760; Name=FC930760; organism=Citrus clementina; type=EST; length=629bp
GAATCGTCAGCCTTTTCACTCTTGCTCTCTAACAACTCCGCTACCAAATG
GAAGTCGCCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTT
AGCAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACC
TATCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGAC
TTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTG
CAAGTCCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTA
GTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTAC
AAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGA
GCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGC
CCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTGTCGAGAAG
TTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGT
CAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAG
CGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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