FC930760

Overview
NameFC930760
Unique NameFC930760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:26..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  285 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            VIP+    T+  +   D+ S L K+RI++LG +       +I A+ L+L+ E+ E+ IYLY+NS G        GY +   AIYD M Y+KP + TLC+
Sbjct:    3 VIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG--------GYVSSGLAIYDTMQYIKPDVRTLCL 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_CAMHC (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV L       V   ++A+ L+L+ ED +K IYLYINS G        G  T  F+IYD M Y+KP + T+C+
Sbjct:   18 DIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPG--------GVVTSGFSIYDTMNYIKPAVSTICI 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP1_LEPIC (ATP-dependent Clp protease proteolytic subunit 1 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  285 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            VIP+    T+  +   D+ S L K+RI++LG +       +I A+ L+L+ E+ E+ IYLY+NS G        GY +   AIYD M Y+KP + TLC+
Sbjct:    3 VIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG--------GYVSSGLAIYDTMQYIKPDVRTLCL 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CV
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICV 102          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CV
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICV 102          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CV
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICV 102          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_HALOH (ATP-dependent Clp protease proteolytic subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG      ++ LI+A+ L+L+ ED +K I+LYINS G        G  T A A+YD + Y+KP + T+C+
Sbjct:   19 DIYSRLLKDRIVFLGHPINDELSNLIIAQLLFLEAEDPDKDIHLYINSPG--------GSVTAALAMYDTIQYIKPDVATICM 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_ANADF (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG      V  +++A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+
Sbjct:   21 DIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICL 95          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  270 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            P+ T  +P+    +  +   D+ + L   RI++LG      V   ++A+ LYL  ED+ KPIYLYINS G        G  T   AIYD M YVK  + T+CV
Sbjct:    2 PIGTPSVPYRLPGSQFERWVDIYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLYINSPG--------GSVTAGLAIYDTMKYVKSDVVTICV 96          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP2_BACHD (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus halodurans GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLC 575
            D+ S L K+RIV+LG +    +   I+A+ L+L+ E+ +K IYLYINS G        G  +  FAIYD M +VKP I T+C
Sbjct:   20 DIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIYLYINSPG--------GSTSAGFAIYDTMQFVKPSIHTIC 93          
The following BLAST results are available for this feature:
BLAST of FC930760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP_LEPIN4.019e-1138.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMHC4.019e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_LEPIC4.019e-1138.38ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THESQ5.250e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP15.250e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA5.250e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HALOH5.250e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANADF5.250e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMA5.250e-1137.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BACHD5.250e-1143.90ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionC34108G04EF PostHarvP1 Citrus clementina cDNA clone C34108G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930760 ID=FC930760; Name=FC930760; organism=Citrus clementina; type=EST; length=629bp
GAATCGTCAGCCTTTTCACTCTTGCTCTCTAACAACTCCGCTACCAAATG
GAAGTCGCCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTT
AGCAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACC
TATCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGAC
TTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTG
CAAGTCCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTA
GTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTAC
AAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGA
GCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGC
CCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTGTCGAGAAG
TTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGT
CAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAG
CGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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