FC930760

Overview
NameFC930760
Unique NameFC930760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:26..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_PASMU (ATP-dependent Clp protease proteolytic subunit OS=Pasteurella multocida GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  273 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            VI MV+     TA  +   D+ S L K R+++LG      +  LI+A+ L+L+ ED EK I +YINS G        G  T   AIYD M +VKP I TLCV
Sbjct:    3 VIPMVV---EQTARGERSYDIYSRLLKERVIFLGGEVEDRMANLIVAQLLFLESEDPEKDINIYINSPG--------GSVTAGMAIYDTMQFVKPDIRTLCV 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_DESDG (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio desulfuricans (strain G20) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI+ LG     +V  LI A+ L+L+ E+ EK IYLYINS G        G  T   AIYD M Y+  P+ TLC+
Sbjct:   18 DIYSRLLKDRIILLGTPVDDNVASLICAQLLFLESENPEKEIYLYINSPG--------GVVTAGLAIYDTMQYISAPVATLCM 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_BRAHW (ATP-dependent Clp protease proteolytic subunit OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 3
Query:  282 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            M IP+    T+  +   D+ S L K+RI++LG      V  +++A+ L+L+  D EK I LYINS G        G  T A  +YD M YVKP + TLCV
Sbjct:    6 MTIPYVIEQTSRGERSYDIYSRLLKDRIIFLGGEINDDVANVVIAQLLFLESADPEKDISLYINSPG--------GVVTAALGMYDTMQYVKPDVATLCV 97          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_AQUAE (ATP-dependent Clp protease proteolytic subunit OS=Aquifex aeolicus GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L ++RIV LG      V  LI+A+ L+L+ +D +K IYLYINS G        G  T   AIYD M Y+KP + T+C+
Sbjct:   26 DIYSRLLQDRIVLLGSPIDDHVANLIVAQLLFLESQDPDKDIYLYINSPG--------GSVTAGLAIYDTMQYIKPDVVTICM 100          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_ANASK (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain K) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+
Sbjct:   21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICL 95          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_ANADE (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+
Sbjct:   21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICL 95          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_ANAD2 (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG      V  +I+A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+
Sbjct:   21 DIYSRLLKDRIIFLGTPVDDDVANVIIAQLLFLESEDPDKDINLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICL 95          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP1_BACCR (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI+ +G      V   ++A+ L+L+ EDAEK IYLYINS G        G  T  FAI D M  +KP + TLC+
Sbjct:   19 DIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPG--------GSTTAGFAILDTMNLIKPDVQTLCM 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_THELT (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG +    V  L++A+ L+L+ ED +K I LYINS G        G  T   AIYD M Y+K  + T+CV
Sbjct:   23 DIYSRLLKDRIVFLGYAIDDHVANLVVAQLLFLEAEDPDKDIQLYINSPG--------GSVTAGLAIYDTMQYIKSDVVTICV 97          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG     +V  L++A+ L+L+ ED +K I LYINS G        G  T   AIYD + Y++P + T+CV
Sbjct:   20 DIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISLYINSPG--------GSITAGMAIYDTLQYIRPDVSTICV 94          
The following BLAST results are available for this feature:
BLAST of FC930760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP_PASMU6.856e-1142.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESDG6.856e-1144.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BRAHW6.856e-1140.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AQUAE6.856e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANASK6.856e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANADE6.856e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANAD26.856e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_BACCR6.856e-1143.37ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THELT8.954e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SYNWW8.954e-1140.96ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34108G04EF PostHarvP1 Citrus clementina cDNA clone C34108G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930760 ID=FC930760; Name=FC930760; organism=Citrus clementina; type=EST; length=629bp
GAATCGTCAGCCTTTTCACTCTTGCTCTCTAACAACTCCGCTACCAAATG
GAAGTCGCCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTT
AGCAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACC
TATCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGAC
TTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTG
CAAGTCCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTA
GTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTAC
AAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGA
GCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGC
CCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTGTCGAGAAG
TTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGT
CAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAG
CGCTTCTCTTGGGTGCCGGTGCCAAAGGA
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