FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ALHEH (Methylthioribose-1-phosphate isomerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.055e-31
Identity = 88/221 (39.82%), Postives = 127/221 (57.47%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIML-KDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++++++ ++   L+LLDQR+LP ET++L+   +AD   AIR+MVVRG             V +    A +   AD  + +   L  L S+RPTAVNL  A  ++++++    A    A       +EAA + + +DD+  N+ +G  GA  +      +   VLTHCNTGSLAT GYGTALGVIR+  S   L   Y  ETRP+ QG+RLTA+ELV D IP
Sbjct:    5 DTVRALDWQGDHLKLLDQRRLPAETVWLDCHSAADTADAIRDMVVRGAPAIGIAAAYG--VVLAARAAMARRPADWPAAMAADLARLRSARPTAVNLFWALDRMQQVVDSDPADPLAA-------LEAAAVAIHEDDLTANRRMGELGAHLIP-----AGAGVLTHCNTGSLATGGYGTALGVIRSAWSGKGLSAVYADETRPWLQGARLTAWELVADGIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEAE (Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 87/219 (39.73%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R G+L+LLDQR LP E ++LE   +A+   AIR+MVVRG               V    A      D  + L +    L  SRPTAVNL  A  ++++ + +      E +    A +EA  I + + D   N  +   G   ++ Q + S  ++LTHCNTG+LAT G+GTALGVIRA H EG++ R Y  ETRP+ QGSRLTA+EL ++ IP
Sbjct:   11 VKAIEWRDGTLRLLDQRLLPQEEVWLEHESAAEVAKAIRDMVVRGAPAIGISAAYGI---VLGARARLAQGGDWRAALEEDFRLLADSRPTAVNLFWALNRMRDRLERM----KEGDQPL-AVLEAEAISIHESDREANLTMAQLGMELIRKQ-QGSPQNILTHCNTGALATGGFGTALGVIRAAHLEGLVNRIYADETRPWLQGSRLTAWELANEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEAB (Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 87/219 (39.73%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R G+L+LLDQR LP E ++LE   +A+   AIR+MVVRG               V    A      D  + L +    L  SRPTAVNL  A  ++++ + +      E +    A +EA  I + + D   N  +   G   ++ Q + S  ++LTHCNTG+LAT G+GTALGVIRA H EG++ R Y  ETRP+ QGSRLTA+EL ++ IP
Sbjct:   11 VKAIEWRDGTLRLLDQRLLPQEEVWLEHESAAEVAKAIRDMVVRGAPAIGISAAYGI---VLGARARLAQGGDWRAALEEDFRLLADSRPTAVNLFWALNRMRDRLERM----KEGDQPL-AVLEAEAISIHESDREANLTMAQLGMELIRKQ-QGSPQNILTHCNTGALATGGFGTALGVIRAAHLEGLVNRIYADETRPWLQGSRLTAWELANEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEA8 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.602e-31
Identity = 87/219 (39.73%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R G+L+LLDQR LP E ++LE   +A+   AIR+MVVRG               V    A      D  + L +    L  SRPTAVNL  A  ++++ + +      E +    A +EA  I + + D   N  +   G   ++ Q + S  ++LTHCNTG+LAT G+GTALGVIRA H EG++ R Y  ETRP+ QGSRLTA+EL ++ IP
Sbjct:   11 VKAIEWRDGTLRLLDQRLLPQEEVWLEHESAAEVAKAIRDMVVRGAPAIGISAAYGI---VLGARARLAQGGDWRAALEEDFRLLADSRPTAVNLFWALNRMRDRLERM----KEGDQPL-AVLEAEAISIHESDREANLTMAQLGMELIRKQ-QGSPQNILTHCNTGALATGGFGTALGVIRAAHLEGLVNRIYADETRPWLQGSRLTAWELANEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEA7 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=mtnA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 87/219 (39.73%), Postives = 125/219 (57.08%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R G+L+LLDQR LP E ++L+   +A+   AIR+MVVRG               V    A      D  + L +    L  SRPTAVNL  A  +++E + +      E +    A +EA  I + D D   N  +   G   ++ Q ++S  ++LTHCNTG+LAT G+GTALGVIRA H EG++ R +  ETRP+ QGSRLTA+EL ++ IP
Sbjct:   11 VKAIEWRDGTLRLLDQRLLPQEEVWLDHGSAAEVAKAIRDMVVRGAPAIGISAAYGI---VLGARARLARGGDWRTALEEDFRLLADSRPTAVNLFWALNRMRERLERM----KEGDRPL-AVLEAEAISIHDSDREANLTMAQLGMELIRKQ-QSSPQNILTHCNTGALATGGFGTALGVIRAAHLEGLVNRIHADETRPWLQGSRLTAWELANEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_HAHCH (Methylthioribose-1-phosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=mtnA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.471e-30
Identity = 86/226 (38.05%), Postives = 122/226 (53.98%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDK------LEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +S+ +I +    L LLDQRKLPL+  Y+      +   AIR+MVVRG                  + A  G A  AA F  D+      LE L  SRPTAVNL  A  +++ +I  A+        +F   +E A  + ++D+  N  +G  GA  +    ++ + ++LTHCNTGSLAT GYGTALGVIR+ +   ++   +  ETRP+ QG+RLTA+EL  D IP
Sbjct:    4 SSVSAIRWANNQLILLDQRKLPLQEAYVNCVTHVEVADAIRQMVVRG-------------APAIGIAAAYGVALAAAEFGSDRDRLHRALETLADSRPTAVNLFWALRRMRGLIDGASVA-----DLFPLLVEEATRIHEEDLQANLTMGELGADLIA---ESGRGALLTHCNTGSLATGGYGTALGVIRSAYRRDLVTEVFADETRPWLQGARLTAWELCQDDIP 208          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_CHLTE (Methylthioribose-1-phosphate isomerase OS=Chlorobium tepidum GN=mtnA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.921e-30
Identity = 80/222 (36.04%), Postives = 120/222 (54.05%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQ----LKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            + +I ++ G+ + LDQR LPL+ I++E ++  +   AI+ + VRG               V  +N ++G  A    +  + +  + +SRPTAVNL  A  K++E+   A        ++F    + A  +  D++     I  +G   L+      LK  K +VLTHCNTG+LA  G GTALGVIR  + EG++ER   SE+RP  QG RLTA+EL HD IP
Sbjct:    2 IDAISFKNGTFRYLDQRFLPLQEIHVETKNHQEAIEAIKTLAVRGAPLIGASAGYTV---VLGINEYTGDKAGFPEYFKNLIAEVNASRPTAVNLFFATKKMQEVYD-ANFENDSLEALFAKMTDMAYKIHNDEIDNCDKIARHGVELLKQDFADVLKTRKLNVLTHCNTGTLACCGIGTALGVIRLAYQEGLIERVITSESRPLLQGLRLTAWELEHDGIP 219          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFA (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa GN=mtnA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.509e-30
Identity = 84/207 (40.58%), Postives = 116/207 (56.04%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L+LLDQRKLP    Y+E   S D   AIR ++VRG             +    + A  G   +A   L   L+ L ++RPTAVNL+   A+++  +S A A         QA    AE + ++D+  N+ +G+YGA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++G + R +  ETRP+ QG+RLT +EL  D I
Sbjct:   25 LKLLDQRKLPFVVEYVECHSSEDVTQAIRALIVRGAPAIGIVAGWGAVLAAREIEAVDGI--EALRKLEPALQRLHAARPTAVNLAWVLARMRRTLSAAHADWR------QAMAREAESIAREDLTANRCMGAYGAALIP-----IGSGVLTHCNTGSLATAGFGTALGVIRAGIAQGRIARVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_METCA (Methylthioribose-1-phosphate isomerase OS=Methylococcus capsulatus GN=mtnA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.509e-30
Identity = 94/224 (41.96%), Postives = 128/224 (57.14%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWS-AIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF---LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++Q++ +  G L++LDQR LP + +Y +I D+A G + AI  M VRG                  L A +  A D A +   + D +  L  SRPTAVNL  A  +++E     A  A E + V  A + AA  + +DD+A N A+G  GA+ L          VLTHCNTG+LAT GYGTALGVIR+    G LER Y +ETRP++QG+RLT +EL  DRIP
Sbjct:   10 SAVQALKWSDGGLEVLDQRLLPGDVVY-QIFDTAAGVAEAIASMRVRGAPAIGIAAAYGVV-----LGARAAYARDPAHWKRAVEDDIAVLARSRPTAVNLFWALERMRE-----AMAAIEGDPV-PALLAAARRIHEDDLAANLAMGELGAAIL-----GGCKGVLTHCNTGALATGGYGTALGVIRSTWRRGALERVYATETRPWSQGARLTVWELGQDRIP 216          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFM (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain M12) GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 82/207 (39.61%), Postives = 115/207 (55.56%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L+LLDQRKLP    Y+E   S D   AIR ++VRG             +    + A  G   +A   L   L+ L ++RPTAVNL+   A+++  +S A A   +           AE + ++D+  N+ +G+YGA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++G + R +  ETRP+ QG+RLT +EL  D I
Sbjct:   25 LKLLDQRKLPFVVEYVECHSSEDVTQAIRTLIVRGAPAIGIVAGWGAVLAAREIEAVDGI--EALRKLEPALQRLHAARPTAVNLAWVLARMRRTLSAAHADWRQVMEC------EAESIAREDITANRCMGAYGAALIP-----IGSGVLTHCNTGSLATAGFGTALGVIRAGIAQGRIARVFAGETRPWLQGARLTVWELQQDGI 218          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_ALHEH5.055e-3139.82Methylthioribose-1-phosphate isomerase OS=Alkalili... [more]
MTNA_PSEAE6.602e-3139.73Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSEAB6.602e-3139.73Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSEA86.602e-3139.73Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSEA71.471e-3039.73Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_HAHCH1.471e-3038.05Methylthioribose-1-phosphate isomerase OS=Hahella ... [more]
MTNA_CHLTE1.921e-3036.04Methylthioribose-1-phosphate isomerase OS=Chlorobi... [more]
MTNA_XYLFA2.509e-3040.58Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_METCA2.509e-3041.96Methylthioribose-1-phosphate isomerase OS=Methyloc... [more]
MTNA_XYLFM1.245e-2939.61Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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