FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSESM (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. tomato GN=mtnA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 87/218 (39.91%), Postives = 119/218 (54.59%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R  +L LLDQR LP E ++     +A    AIR MVVRG               V    A      D    L + ++ L  SRPTAVNL  A  ++++ + +     +  N +     EA  I L D  A N  +   GA  ++    N + +VLTHCNTG+LAT G+GTALGVIRA H EG++ER Y  ETRP+ QGSRLTA+EL ++ IP
Sbjct:   11 VKAIDWRDDALYLLDQRVLPFEEVWHRYTTAAGVAEAIRTMVVRGAPAIGISAAYGA---VLGARARIAEGGDWYPALEEDMQLLADSRPTAVNLFWALNRIRDRLMRVK---NGDNPLAALEAEAVAIHLSDREA-NLTMAQLGADLIRKHQGNLQ-TVLTHCNTGALATGGFGTALGVIRAAHLEGMIERVYADETRPWLQGSRLTAWELANEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEU5 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=mtnA PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 85/219 (38.81%), Postives = 120/219 (54.79%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++SI +    L LLDQRKLP E ++     +A    AIR+MVVRG             +      A  G   D    L + +  L +SRPTAVNL  A  +++E + +             A +EA  I + + D   N A+  +G   ++    N + ++LTHCNTG+LAT G+GTALGVIRA H +G++ER Y  ETRP+ QGSRLTA+EL+ D +P
Sbjct:   11 VKSIEWHGDRLSLLDQRKLPTEEVWHSCDSAAAVADAIRDMVVRGAPAIGISAAYALVLAARTRMAAGG---DWRQALEEDVALLAASRPTAVNLFWALNQMRERLERLKPGEDPC-----AALEAQAISIHESDREANLAMAQFGVDLIRRHQGNPQ-NLLTHCNTGALATGGFGTALGVIRAAHLDGLVERVYVDETRPWLQGSRLTAWELLGDGVP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_RHOFD (Methylthioribose-1-phosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mtnA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 83/219 (37.90%), Postives = 116/219 (52.97%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++Q++ +R G L+++DQR LP    YL    +A+    IR MVVRG             +E   L     T    A  L    + L +SRPTAVNL  A A+++ +       A     +    +  A  +  DDV  N+A+G+YGA+ L +  +     VLTHCN G+LATAG+GTALGVIR+    G        ETRPF QG+RLTA+E+V + IP
Sbjct:   10 AVQTLRWREGRLEMIDQRVLPARFEYLPFTSAAEVAEGIRSMVVRGAPAIGCAAAYGVALESVQLRG--ATREAFAVGLQRGFDVLAASRPTAVNLFWALARMRAVWDANQHRA--VGDIVDCLLAQAHEISADDVRINRAMGAYGAALLADGAR-----VLTHCNAGALATAGHGTALGVIRSAVQAGKRISVIADETRPFLQGARLTAWEMVQENIP 219          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEU2 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=mtnA PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.179e-29
Identity = 87/218 (39.91%), Postives = 120/218 (55.05%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R  +L LLDQR LP E ++     +     AIR MVVRG               V    A     AD    L + ++ L  SRPTAVNL  A  ++++ + +      +  +  +A  EA  I L D  A N  +   GA  ++    N + +VLTHCNTG+LAT G+GTALGVIRA H EG++ER Y  ETRP+ QGSRLTA+EL ++ IP
Sbjct:   11 VKAIDWRDDALYLLDQRVLPFEEVWHRYTTAEGVAEAIRTMVVRGAPAIGISAAYGA---VLAARARIAQGADWYPALEEDMQLLADSRPTAVNLFWALNRMRDRLMRVK-DGDDPLAALEA--EAVAIHLSDREA-NLTMAQLGADLIRKHQGNLQ-TVLTHCNTGALATGGFGTALGVIRAAHLEGMIERVYADETRPWLQGSRLTAWELANEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THEPX (Methylthioribose-1-phosphate isomerase OS=Thermoanaerobacter sp. (strain X514) GN=mtnA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 87/229 (37.99%), Postives = 117/229 (51.09%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDK-----------LEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++SI ++   L L+DQRKLP      E +   D   AI+EMVVRG                    A  G    A  FL +            LE + +SRPTAVNL  A  ++K++I K      E   ++QA  + A+ +  +D+ TNK +  +G     N++      +LTHCNTG+LAT GYGTALGVIR  H  G     Y  ETRP  QGS+LTA+ELV + IP
Sbjct:    4 IKSIEFKNEVLYLIDQRKLPNSYEIFECKTYRDVNFAIKEMVVRG-------------APAIGAAAAYGVVLAAKEFLKEDREIFFEKIEEALEVIANSRPTAVNLMWAVKRMKKVIEKNKEL--ELIDIYQALKKEADSIYLEDIETNKKMAKFG-----NEVIKENAVILTHCNTGALATVGYGTALGVIREAHYSGKNIFVYADETRPRLQGSKLTAWELVQEGIP 212          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THEP3 (Methylthioribose-1-phosphate isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=mtnA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 87/229 (37.99%), Postives = 117/229 (51.09%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDK-----------LEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++SI ++   L L+DQRKLP      E +   D   AI+EMVVRG                    A  G    A  FL +            LE + +SRPTAVNL  A  ++K++I K      E   ++QA  + A+ +  +D+ TNK +  +G     N++      +LTHCNTG+LAT GYGTALGVIR  H  G     Y  ETRP  QGS+LTA+ELV + IP
Sbjct:    4 IKSIEFKNEVLYLIDQRKLPNSYEIFECKTYRDVNFAIKEMVVRG-------------APAIGAAAAYGVVLAAKEFLKEDREIFFEKIEEALEVIANSRPTAVNLMWAVKRMKKVIEKNKEL--ELIDIYQALKKEADSIYLEDIETNKKMAKFG-----NEVIKENAVILTHCNTGALATVGYGTALGVIREAHYSGKNIFVYADETRPRLQGSKLTAWELVQEGIP 212          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_STRMK (Methylthioribose-1-phosphate isomerase OS=Stenotrophomonas maltophilia (strain K279a) GN=mtnA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 84/218 (38.53%), Postives = 126/218 (57.80%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEA-AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ I +   +LQLLDQRKLP    ++   DS +  +AI  + VRG             +   ++ A  G  A A   L   L+ L +SRPTAVNL+ A A+++  ++ A A        ++A +EA A+ + ++D+A N+ +G+ GA  ++     +   VLTHCNTGSLATAG+GTALGVIRA  ++  + R +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPILWTGDALQLLDQRKLPFVVEHVVCHDSDEVAAAIHALTVRGAPAIGIAAAWGVVLAARDVQAADG--AHALQQLEPALQRLNASRPTAVNLAWALARMRRCLNAAGAD-------WKAKLEAEAQAIAEEDLAANRHMGALGAGLIE-----AGSGVLTHCNTGSLATAGFGTALGVIRAGMAQHRIARVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_STRM5 (Methylthioribose-1-phosphate isomerase OS=Stenotrophomonas maltophilia (strain R551-3) GN=mtnA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 84/218 (38.53%), Postives = 126/218 (57.80%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEA-AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ I +   +LQLLDQRKLP    ++   DS +  ++I  + VRG             +   ++ A  G  A A   L   L+ L +SRPTAVNL+ A A+++  +S A A        ++A +EA A+ + ++D+A N+ +G+ GA  ++     +   VLTHCNTGSLATAG+GTALGVIRA  ++  + R +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPILWTGEALQLLDQRKLPFVVEHVVCHDSDEVAASIHALTVRGAPAIGIAAAWGVVLAARDVQAADG--AHALQQLEPALQRLNASRPTAVNLAWALARMRRCLSAAGAD-------WKALLEAEAQAIAEEDLAANRHMGALGAGLIE-----AGSGVLTHCNTGSLATAGFGTALGVIRAGMAQHRIARVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_NOSP7 (Methylthioribose-1-phosphate isomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=mtnA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 83/223 (37.22%), Postives = 123/223 (55.16%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLG--DKLEYLV-SSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            N +  + +  G++ L+DQ +LP E  ++EI  S D   AI+ M+VRG                  L A     +D   FL   DK+  L+ S+RPTAVNL  A +++ ++  +   T  +   + Q   + A+ +  +D+ T +AIG  G + L       K ++LTHCN G+LATAGYGTALGV+R+   EG LER +  ETRP  QG++LTA+E V + IP
Sbjct:    6 NHVYPVIWHNGAVSLIDQTRLPNEYTFVEIHRSEDMARAIKTMIVRGAPAIGVAAAYGMY-----LGAREIETSDRHEFLQNLDKVAQLLGSTRPTAVNLFWAISRMMKVAKETLGTVED---IKQTLFQTAQAINVEDLQTCQAIGDNGLTVLP--ASPEKLTLLTHCNAGALATAGYGTALGVVRSAWREGRLERLFADETRPRLQGAKLTAWECVQEGIP 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFT (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 81/207 (39.13%), Postives = 114/207 (55.07%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L+LLDQRKLP    Y+E   S D   AIR ++VRG             +    + A  G   +A   L   L+ L ++RPTAVNL+   A+++  +S A A   +           AE + ++D+  N+ +G+YGA+ +          VLTHCNTGSLATAG+GTALGVIR   ++G + R +  ETRP+ QG+RLT +EL  D I
Sbjct:   25 LKLLDQRKLPFVVEYVECHSSEDVTQAIRTLIVRGAPAIGIVAGWGAVLAAREIEAVDGI--EALCKLEPALQRLHAARPTAVNLAWVLARMRRTLSAAHADWRQVMEC------EAESIAREDLTANRCMGAYGAALIP-----IGSGVLTHCNTGSLATAGFGTALGVIRDGIAQGRIARVFVGETRPWLQGARLTVWELQQDGI 218          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_PSESM1.245e-2939.91Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_PSEU52.124e-2938.81Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_RHOFD4.731e-2937.90Methylthioribose-1-phosphate isomerase OS=Rhodofer... [more]
MTNA_PSEU26.179e-2939.91Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_THEPX1.054e-2837.99Methylthioribose-1-phosphate isomerase OS=Thermoan... [more]
MTNA_THEP31.054e-2837.99Methylthioribose-1-phosphate isomerase OS=Thermoan... [more]
MTNA_STRMK1.054e-2838.53Methylthioribose-1-phosphate isomerase OS=Stenotro... [more]
MTNA_STRM51.054e-2838.53Methylthioribose-1-phosphate isomerase OS=Stenotro... [more]
MTNA_NOSP71.054e-2837.22Methylthioribose-1-phosphate isomerase OS=Nostoc p... [more]
MTNA_XYLFT1.377e-2839.13Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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