FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:385..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XYLF2 (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain M23) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 81/207 (39.13%), Postives = 114/207 (55.07%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L+LLDQRKLP    Y+E   S D   AIR ++VRG             +    + A  G   +A   L   L+ L ++RPTAVNL+   A+++  +S A A   +           AE + ++D+  N+ +G+YGA+ +          VLTHCNTGSLATAG+GTALGVIR   ++G + R +  ETRP+ QG+RLT +EL  D I
Sbjct:   25 LKLLDQRKLPFVVEYVECHSSEDVTQAIRTLIVRGAPAIGIVAGWGAVLAAREIEAVDGI--EALCKLEPALQRLHAARPTAVNLAWVLARMRRTLSAAHADWRQVMEC------EAESIAREDLTANRCMGAYGAALIP-----IGSGVLTHCNTGSLATAGFGTALGVIRDGIAQGRIARVFVGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEPF (Methylthioribose-1-phosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 87/225 (38.67%), Postives = 118/225 (52.44%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNL-------SDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R G+L LLDQR LP E  ++    +A    AIR MVVRG               V    A      D  + L +    L  SRPTAVNL        D   +LKE     AA  +EA ++ ++  EA           N  +   G   ++    N++ ++LTHCNTG+LAT G+GTALGVIRA   EG++ER Y  ETRP+ QGSRLTA+EL ++ IP
Sbjct:   11 VKAIDWRDGALHLLDQRVLPFEENWIAYTSAAGVAEAIRSMVVRGAPAIGISAAYGI---VLAARARIAEGGDWYAALEEDFMLLADSRPTAVNLFWALNRMHDRLDRLKENADPLAALEAEAIAIHESDREA-----------NLTMAQLGVDLIRKHQGNAQ-AILTHCNTGALATGGFGTALGVIRAAFIEGMVERVYADETRPWLQGSRLTAWELANEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_DESAP (Methylthioribose-1-phosphate isomerase OS=Desulforudis audaxviator (strain MP104C) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 78/220 (35.45%), Postives = 119/220 (54.09%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEY---LVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++++ ++ G L +LDQ +LP ET+Y+      D   AI+ M VRG             +          T  D  SFL    E    L  +RPTAVNL  A   L+ ++++A  T  E  ++  A +  A+ ++++D+  N+ +G +G   + +  +     +LTHCN G+LATAGYGTALGVIRA    G   + +  ETRPF QG+RLTA+EL+ + I
Sbjct:    3 VEALYWKDGRLYVLDQTRLPEETVYVTCSSYRDAAEAIKTMRVRGAPAIGAVGAFGLVLGALE------TGGDRESFLARLREIAGVLRDTRPTAVNLDWA---LERMLARAVETLGEPGALRAALLAEAQAIVREDIEANRRMGLFGRELIPDPAR-----ILTHCNAGALATAGYGTALGVIRAAREAGKQVKVFAGETRPFLQGARLTAWELMREGI 208          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PELCD (Methylthioribose-1-phosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 86/219 (39.27%), Postives = 121/219 (55.25%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S++ I YR G ++++DQR LP + ++LE RD      AI  MVVRG             +   ++ A S  +  AA  L +  + L ++RPTAVNL  A  +++    + AA   +A  +  A ++ A+ +   D A N+A+G +GA  + +  +     VLTHCN G+LAT GYGTALGVIRA    G        ETRPF QGSRLTA+EL  D IP
Sbjct:    2 SIKPIEYRDGVVRMIDQRLLPTQELWLEYRDYQAVAEAILTMVVRGAPAIGVAAAYGAALGARDIEADSFESFLAA--LKNVCDTLAATRPTAVNLFWALERMQAKARELAALPLDA--IKAALMDEAQAIAAQDDAINRAMGRHGAELIADNAR-----VLTHCNAGALATGGYGTALGVIRAAVESGKKISVLADETRPFLQGSRLTAWELHKDGIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_MAGSM (Methylthioribose-1-phosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.067e-28
Identity = 80/208 (38.46%), Postives = 122/208 (58.65%), Query Frame = 1
Query:   40 QLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHS--EGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++LDQR+LP E + L  R +A+    IR+MVVRG             VE   L A  G  +   + + + +  L  SRPTAVNL+ A  ++  ++       +  + V Q  ++ A  + ++D+A+ +A+G++GA+ L    +     ++THCN G+LATAGYGTALGVIRA H+  +G L R   +ETRP+ QG+RLTA+EL+ D I
Sbjct:   17 RMLDQRRLPNEVVNLYYRSAAEMADGIRDMVVRGAPAIGCACAYGVAVEAKRL-AKQGIPSHWPTAMAEGMATLRQSRPTAVNLTWALERMAPLLE-----TTPPHEVPQRLLQEAHAIREEDIASCRAMGAHGAALLPTNSQRPTV-IMTHCNAGALATAGYGTALGVIRAAHTAQQGNL-RVIANETRPYLQGARLTAWELLQDHI 216          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_DESRM (Methylthioribose-1-phosphate isomerase OS=Desulfotomaculum reducens (strain MI-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.067e-28
Identity = 84/224 (37.50%), Postives = 120/224 (53.57%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLV----SSRPTAVNLSDAAAKLKEIISKAAATASEAN--SVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            + +I +    LQLLDQ KLP    Y++  D      AI+++ VRG             V    ++A      D  +FL +KLE +     ++RPTAVNL  A  ++   +S    TA E N   + +  +E A  +  +DV +N+ +G YG   L  + +     VLTHCN G+LATAGYGTALGV+RA H +G     Y  ETRP  QG+RLT++E+V + IP
Sbjct:    1 MNAIIWENNQLQLLDQTKLPRTIEYIQCTDYHTVGKAIKKLSVRGAPAIGAAAAYGLVVGAQQVDA-----TDRKTFL-EKLEAIAGELGATRPTAVNLRWALDRMMMRLS----TAPEQNVEDLRKIMLEEAHAIYNEDVESNRKMGEYGQELLPEEAR-----VLTHCNAGALATAGYGTALGVVRAAHEKGKKVHVYADETRPLLQGARLTSWEMVQEGIP 209          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSE14 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=mtnA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 84/218 (38.53%), Postives = 117/218 (53.67%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R  +L LLDQR LP E ++     +     AIR MVVRG               V    A      D    L + ++ L  SRPTAVNL  A  ++++ + +        + +     E+  I L D  A N  +   GA  ++    N + +VLTHCNTG+LAT G+GTALGVIRA H EG++ER Y  ETRP+ QGSRLTA+EL ++ IP
Sbjct:   11 VKAIDWRDDALYLLDQRVLPFEEVWHRYTTAEGVAEAIRTMVVRGAPAIGISAAYGA---VLGARARIAEGGDWYPALEEDMQLLADSRPTAVNLFWALNRMRDRLMRVK---DGDDPLVALEAESVAIHLSDREA-NLTMAQLGADLIRRHQGNLQ-TVLTHCNTGALATGGFGTALGVIRAAHLEGMIERVYADETRPWLQGSRLTAWELANEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_NITOC (Methylthioribose-1-phosphate isomerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=mtnA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.005e-28
Identity = 79/220 (35.91%), Postives = 121/220 (55.00%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            + ++++ +    ++LLDQR+LP E IY  I   +D   AI +MVVRG             V +     FS   +     L   L  L ++RPTA+NL+ A A+++ II        +      A +  A  + ++D+A N+ +G  G + ++  +      VLTHCNTGSLAT G+GTALGVIR  + +G +E+ +  ETRP+ QG+RLT +EL+ D IP
Sbjct:    6 DQIRAVAWTGAGVRLLDQRRLPQEEIYWTIACVSDVAQAITKMVVRGAPAIGIAAAYG--VVLAARARFSEAGSGWKQLLEADLCDLEAARPTAINLAWALARMQAIIQGLP----DHRDPESALLVEARCIHEEDIAANRRMGELGTTLIEGSV-----GVLTHCNTGSLATGGFGTALGVIRHAYGKGRIEKVFADETRPWLQGARLTTWELLRDGIP 214          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEMY (Methylthioribose-1-phosphate isomerase OS=Pseudomonas mendocina (strain ymp) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 87/218 (39.91%), Postives = 112/218 (51.38%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +Q+I +R G+L LLDQR LP    +L    +A+   AIR+MVVRG               V    A      D    L      L  SRPTAVNL  A  +++E   + A    +   + Q   EA  I   D  A N  +   G   ++    N +  VLTHCN G+LAT G+GTALGVIRA H EG+LE  Y  ETRP+ QG+RLTA+EL  D +P
Sbjct:   11 VQAIEWRDGALYLLDQRLLPHRQTWLRFDHAAEVADAIRDMVVRGAPAIGIAAAYGL---VLGARARLQAGGDWREALEADFARLEQSRPTAVNLFWALQRMRE---RLARLKDDGEVLGQLEAEAVGIHASDREA-NLTMAQLGMELIRKHQGNPQV-VLTHCNAGALATGGFGTALGVIRAAHLEGLLEHVYVDETRPWLQGARLTAWELAGDGVP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_CLOTH (Methylthioribose-1-phosphate isomerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 80/214 (37.38%), Postives = 116/214 (54.21%), Query Frame = 1
Query:   22 YRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKL-KEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            Y  G L+LLDQ  LP E   +E+++  +   AI+ M+VRG             +    +N  S     A   L    + + S+RPTAVNL  A  ++    +S    T  E   + +   E A +M K+D+ +N++IG +G     N+L    +++LTHCN G+LAT  YGTALGVIRA H  G   + +  ETRP+ QG+RLTA+EL+ D IP
Sbjct:    6 YCNGVLKLLDQTLLPGEQKIVELKNYIEVADAIKNMIVRGAPAIGVTAAYGVAIASKAINTDSKEEFFAE--LAKVCDIIKSTRPTAVNLFWAVDRVYSRAVSNRDKTIEEIKKLIE---EEAYLMEKEDIESNRSIGRFG-----NELIKENWTILTHCNAGALATCDYGTALGVIRAAHESGKNIQVFADETRPYLQGARLTAWELMQDNIP 209          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_XYLF21.377e-2839.13Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_PSEPF1.377e-2838.67Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_DESAP1.377e-2835.45Methylthioribose-1-phosphate isomerase OS=Desulfor... [more]
MTNA_PELCD1.798e-2839.27Methylthioribose-1-phosphate isomerase OS=Pelobact... [more]
MTNA_MAGSM3.067e-2838.46Methylthioribose-1-phosphate isomerase OS=Magnetoc... [more]
MTNA_DESRM3.067e-2837.50Methylthioribose-1-phosphate isomerase OS=Desulfot... [more]
MTNA_PSE144.005e-2838.53Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_NITOC4.005e-2835.91Methylthioribose-1-phosphate isomerase OS=Nitrosoc... [more]
MTNA_PSEMY5.231e-2839.91Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_CLOTH5.231e-2837.38Methylthioribose-1-phosphate isomerase OS=Clostrid... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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