FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:385..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_LEPIN (Methylthioribose-1-phosphate isomerase OS=Leptospira interrogans GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 82/221 (37.10%), Postives = 114/221 (51.58%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF--LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            + L+ I ++   L LLDQR LP  T Y+  +   D   AIREMVVRG                F +  +  +     SF  L  KL  L+ SRPTAVNL  A  +      ++  ++     + +   E A  ML +D+  N  +  Y  S    Q   S  +++THCNTG+LATAG+GTALGVIR+L   G     +  ETRP+ QG+RLTA+EL  ++I
Sbjct:    4 SGLKPILWKNKELILLDQRVLPGTTSYITAKTLEDCIFAIREMVVRGAPAIAITG-------AFGITLYWNSLVSKPSFSELKLKLSELLESRPTAVNLRLAIEEFSSRFPESNYSSFSLEEIQKGAEELALFMLSEDLENNLTLSKYALSLFPKQ--PSSLNIITHCNTGALATAGHGTALGVIRSLRDAGHSLTVFADETRPYLQGARLTAWELQEEKI 215          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_LEPIC (Methylthioribose-1-phosphate isomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=mtnA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.832e-28
Identity = 82/221 (37.10%), Postives = 114/221 (51.58%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF--LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            + L+ I ++   L LLDQR LP  T Y+  +   D   AIREMVVRG                F +  +  +     SF  L  KL  L+ SRPTAVNL  A  +      ++  ++     + +   E A  ML +D+  N  +  Y  S    Q   S  +++THCNTG+LATAG+GTALGVIR+L   G     +  ETRP+ QG+RLTA+EL  ++I
Sbjct:    4 SGLKPILWKNKELILLDQRVLPGTTSYITAKTLEDCIFAIREMVVRGAPAIAITG-------AFGITLYWNSLVSKPSFSELKLKLSELLESRPTAVNLRLAIEEFSSRFPESNYSSFSLEEIQKGAEELALFMLSEDLENNLTLSKYALSLFPKQ--PSSLNIITHCNTGALATAGHGTALGVIRSLRDAGHSLTVFADETRPYLQGARLTAWELQEEKI 215          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THETN (Methylthioribose-1-phosphate isomerase OS=Thermoanaerobacter tengcongensis GN=mtnA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 83/229 (36.24%), Postives = 118/229 (51.53%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDK-----------LEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++++ +R G L L+DQRKLPL   + E R   D   AI++MVVRG                    A  G    A  F+ ++           L  L  SRPTAVNL+ A  +++ ++ K    +   + +++A  E A  +  +D+ TNK +   G     N++      +LTHCNTG+LAT GYGTALGVIR  H  G     Y  ETRP  QG++LTA+ELV + IP
Sbjct:    4 IKTMEFRDGVLYLIDQRKLPLSYEFFECRTYQDVDFAIKDMVVRG-------------APAIGAAAAYGVVLAAQQFMKEEKENFLKNMENALNVLSKSRPTAVNLTWAIGRMRGVLEKVKDLS--VSDIYEALKEEANKIYFEDLETNKKMAKIG-----NEVIKPNAVILTHCNTGALATVGYGTALGVIREAHYSGKNIFVYADETRPRLQGAKLTAWELVQEGIP 212          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_HALHL (Methylthioribose-1-phosphate isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 85/220 (38.64%), Postives = 118/220 (53.64%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++++++ +R   L LLDQR LP +  YL   D+A    AI +MVVRG             +         G+   A   + + ++ L  SRPTAVNL  A  +++      AA   E      A +  A+ + ++DVA N+ +G  GA  +Q         VLTHCNTGSLAT G GTALGVIR   ++G +ER +  ETRP+ QGSRLTA+EL  D IP
Sbjct:    7 DTVRALEWRDEGLYLLDQRLLPDQEQYLCCADAASVAQAITDMVVRGAPAIGVAAGYGAALAGAAAWRTHGSGWQAG--MAEDIDTLRRSRPTAVNLGWALRRMEAF----AARLPEDQDPAPALLAEAQAIHEEDVAANRRMGRSGAGLIQ-----PGSGVLTHCNTGSLATGGLGTALGVIRTAWADGRVERVFADETRPWLQGSRLTAWELAADGIP 215          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_MICAN (Methylthioribose-1-phosphate isomerase OS=Microcystis aeruginosa (strain NIES-843) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.988e-27
Identity = 84/223 (37.67%), Postives = 121/223 (54.26%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKL---EYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            NS+  + ++   + L+DQ +LP+E   +EI  S     AI  M+VRG                  L A   T      FL D     + L  +RPTAVNL  A  ++ ++   A  +  E   + +  +E A+ + K+DV T +AIG++G   L  Q +  K ++LTHCNTGSLATAGYGTALGVIR+  + G L + Y  ETRP  QG++LTA+E + + IP
Sbjct:    9 NSIYPVRWQDNKVWLIDQTRLPMEYGEVEITSSEAMARAIETMIVRGAPAIGVAAAYGMV-----LGAQEITTDQKEQFLADLTRIADRLAQTRPTAVNLFWAIERMLKV---ARESGPEVAVITKNLLETAQNIQKEDVETCRAIGNHGLLALPEQPE--KLTILTHCNTGSLATAGYGTALGVIRSAWTAGRLIQVYADETRPRLQGAKLTAWECLREGIP 221          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_CALS8 (Methylthioribose-1-phosphate isomerase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.988e-27
Identity = 79/213 (37.09%), Postives = 110/213 (51.64%), Query Frame = 1
Query:   22 YRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +    L +LDQRKLP E  Y       D + AI++M++RG               V           D+A    + L YL +SRPTAVNL  A  ++K++  +A   +   + ++   ++ A+ +  +D + NK IG +G     N L     ++LTHCN G+LAT GYGTALGVIR     G     Y  ETRP+ QG+RLTAFEL  D IP
Sbjct:    6 FENDKLIVLDQRKLPFEKEYFVCSTYQDVYIAIKDMIIRGAPLIGIVAAYGV---VLGFKEIIEKNMDSAKIY-EILNYLANSRPTAVNLFWALERMKKVFEEARNLSK--SQIYSLLMQEAKKIEDEDKSINKKIGEHG-----NTLIKEGANILTHCNAGALATGGYGTALGVIREAFFAGKNIHVYVDETRPYLQGARLTAFELSEDGIP 207          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_MARAV (Methylthioribose-1-phosphate isomerase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.596e-27
Identity = 88/212 (41.51%), Postives = 113/212 (53.30%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSA----IREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L+LLDQR LP E  ++     ADG SA    I +MVVRG                  L A      D  + +   +  L  SRPTAVNL  A  +++++   A  +  EA     A  EA  +  +DD+A N A+  Y    +     +   +VLTHCNTG+LAT GYGTALGVIR LH E +L+R Y  ETRP+ QGSRLTA+EL  D IP
Sbjct:   22 LELLDQRLLPAEEHWIV----ADGASAVAQCITDMVVRGAPAIGISAAYGVA-----LAARHAGGGDWQAEIKQAIRVLAKSRPTAVNLFWALERMEKVFH-ACHSLDEATDRLAA--EAVRLH-EDDLAANLAMADYALEVMN---PDKPIAVLTHCNTGALATGGYGTALGVIRRLHEEKLLKRVYADETRPWLQGSRLTAWELTRDHIP 217          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_DESHD (Methylthioribose-1-phosphate isomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.391e-27
Identity = 78/209 (37.32%), Postives = 110/209 (52.63%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            SL++LDQ +LP+E  Y       +   AI +M VRG             +       +SG  AD  + +      L  +RPTAVNL  A  ++++ + +    A E   + QA +  AE + +DD   N+ IG +G     N +  ++ ++LTHCN G+LAT  YGTALGVIRA    G     Y  ETRPF QG+RLTA EL++D IP
Sbjct:   10 SLKILDQTRLPVEIKYRMAATYEEVAEAIEKMEVRGAPAIGAAAAYGYALGAIG---YSGELADLPAHMEKVQHRLAETRPTAVNLFWALRRMEDRL-RDQHEAKELAEIRQALVAEAENIAEDDRRVNRLIGEHG-----NAIVTAEANILTHCNAGALATVEYGTALGVIRAAQQAGKKVHVYAGETRPFLQGARLTALELMNDHIP 209          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ACAM1 (Methylthioribose-1-phosphate isomerase OS=Acaryochloris marina (strain MBIC 11017) GN=mtnA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.391e-27
Identity = 84/223 (37.67%), Postives = 123/223 (55.16%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXV---EVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            N +  + +R   ++L+DQ +LP +   +EIR S D  +AI+ M+VRG             +   EV   N   G  ++ A  +GD L+   ++RPTAVNL  A  ++ ++   A  T    + +    +  A+ +  DDV T KAIG +G S L    +  K  +LTHCN G+LATAGYGTALGV+R+  + G L R Y  ETRP  QG++LT +E V + IP
Sbjct:    7 NPVYPVVWRGDHVELIDQTRLPQQFSVVEIRRSEDMATAIKTMIVRGAPAIGVAAAYGMYLGSCEVTTDNR-DGFLSELAG-VGDTLK---ATRPTAVNLFWAVDRMLKV---ARQTLGPISQIQDQLLTTAQEIGADDVRTCKAIGDHGLSVLPKDPE--KLCLLTHCNAGALATAGYGTALGVVRSAWTAGRLARVYADETRPRLQGAKLTTWECVQEEIP 219          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_DESDA (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=mtnA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.428e-27
Identity = 83/208 (39.90%), Postives = 109/208 (52.40%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L LLDQR LP +      R   D   A++ MVVRG               V  L    G   D A+ L   +E + ++RPTAVNL  A  +++ +   A   A +   +  A+  AA+ M  +DVA  K +G +GA+ +++        VLTHCN G+LATAGYGTALGVIRA    G        ETRPF QG+RLTA+EL  D IP
Sbjct:   14 LHLLDQRLLPAQEADFVCRSVEDVVYALQTMVVRGAPAIGVTAAWGC---VLALREAQGP--DWAARLEQGMERIAAARPTAVNLRWAVERMRGVWLAAGGEAGDPAPLLTAFAHAAQTMQDEDVAVCKTLGRHGAACIEDG-----DCVLTHCNAGALATAGYGTALGVIRAAVEAGKKVSVIADETRPFLQGARLTAWELERDGIP 211          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_LEPIN6.832e-2837.10Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_LEPIC6.832e-2837.10Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_THETN1.165e-2736.24Methylthioribose-1-phosphate isomerase OS=Thermoan... [more]
MTNA_HALHL1.165e-2738.64Methylthioribose-1-phosphate isomerase OS=Halorhod... [more]
MTNA_MICAN1.988e-2737.67Methylthioribose-1-phosphate isomerase OS=Microcys... [more]
MTNA_CALS81.988e-2737.09Methylthioribose-1-phosphate isomerase OS=Caldicel... [more]
MTNA_MARAV2.596e-2741.51Methylthioribose-1-phosphate isomerase OS=Marinoba... [more]
MTNA_DESHD3.391e-2737.32Methylthioribose-1-phosphate isomerase OS=Desulfit... [more]
MTNA_ACAM13.391e-2737.67Methylthioribose-1-phosphate isomerase OS=Acaryoch... [more]
MTNA_DESDA4.428e-2739.90Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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