FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:385..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_FERNB (Methylthioribose-1-phosphate isomerase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.690e-27
Identity = 77/206 (37.38%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHD 651
            SL L+DQR+LP E +Y+   D      +I+EMVVRG             +    +   S         + +  E L  +RPTAVNL  A  +++    K      +   + +   + A  + K+D+  NKAIG  GA  LQ+      F+VLTHCN G+LAT  YGTALGV+RA   +G   + Y  ETRP+ QG+RLTA+EL+ D
Sbjct:   14 SLILIDQRRLPFEEVYVTCADYRAVALSIKEMVVRGAPAIGATAAFGYVLGAKEILKKSHNYEQVVMQMKNVKETLAKTRPTAVNLFWALERME----KRLIRHGKYEGLVKVLEDEALKIAKEDIEVNKAIGRNGAQLLQDG-----FTVLTHCNAGALATVDYGTALGVLRAAKEQGKKIKVYADETRPYLQGARLTAWELMKD 210          

HSP 2 Score: 21.1718 bits (43), Expect = 6.690e-27
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  687 GCIDEDGRVSAVIVGA 734
            G + + G+++AVIVGA
Sbjct:  223 GWVMKQGKINAVIVGA 238          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_LEPBP (Methylthioribose-1-phosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 82/208 (39.42%), Postives = 113/208 (54.33%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L LLDQR LP +  +L+I+   +   AIREM VRG                  L A   +       +   ++ +  SRPTAVNLS A  + K    K     S  +S+ + +   A  M+  D+  N+ +G  GA  F +NQ   ++F ++THCNTG+LATAG+GTALGVIR+L  +G     Y  ETRPF QGSRLTAFE++ + I
Sbjct:   16 LSLLDQRVLPGKKEFLQIQTMEETIVAIREMAVRGAPAIAITGIFG-----ITLGAKKKSGNSNPVDVDSLIKQVFESRPTAVNLSFALKEAK----KRVEGVSHWDSIAKVWESYALEMMVQDLKANQTLGKNGADLFPKNQ---NEFHIITHCNTGALATAGHGTALGVIRSLRDQGKKVVVYADETRPFLQGSRLTAFEMMEEGI 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_LEPBA (Methylthioribose-1-phosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 82/208 (39.42%), Postives = 113/208 (54.33%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGAS-FLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L LLDQR LP +  +L+I+   +   AIREM VRG                  L A   +       +   ++ +  SRPTAVNLS A  + K    K     S  +S+ + +   A  M+  D+  N+ +G  GA  F +NQ   ++F ++THCNTG+LATAG+GTALGVIR+L  +G     Y  ETRPF QGSRLTAFE++ + I
Sbjct:   16 LSLLDQRVLPGKKEFLQIQTMEETIVAIREMAVRGAPAIAITGIFG-----ITLGAKKKSGNSNPVDVDSLIKQVFESRPTAVNLSFALKEAK----KRVEGVSHWDSIAKVWESYALEMMVQDLKANQTLGKNGADLFPKNQ---NEFHIITHCNTGALATAGHGTALGVIRSLRDQGKKVVVYADETRPFLQGSRLTAFEMMEEGI 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GEOMG (Methylthioribose-1-phosphate isomerase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.554e-27
Identity = 86/231 (37.23%), Postives = 117/231 (50.65%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLE-----------YLVSSRPTAVNLSDAAAKLKEIIS-KAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S ++I +R   + ++DQ +LP E +Y E  D      AIR M++RG                  + A  G A  A   + D  E            L  +RPTAVNL  A  ++K + +     +  E   V +A  EA  I  ++D+A  KAIG +GA  +         +VLTHCN G LATAGYGTALGVIRA H  G   + +  ETRP+ QG+RLTA+EL+ D IP
Sbjct:    2 SFRTIEWRDDKVIMIDQTRLPGEEVYCEYGDYKSVAEAIRGMIIRG-------------APAIGVAAAMGVALGAREIIADTHESFLRQLDNVCDVLARTRPTAVNLFWAIERMKRVAADNCGGSLDEVREVLKA--EAIRIE-EEDLALCKAIGRHGAGLIPEGA-----TVLTHCNAGGLATAGYGTALGVIRAAHEAGKNIQVFADETRPWLQGARLTAWELMKDGIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_DESHY (Methylthioribose-1-phosphate isomerase OS=Desulfitobacterium hafniense (strain Y51) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 77/209 (36.84%), Postives = 110/209 (52.63%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            SL++LDQ +LP+E  Y       +   AI +M VRG             +       +SG  A  ++ +      L  +RPTAVNL  A  ++++ + +    A E   + QA +  AE + +DD   N+ IG +G     N +  ++ ++LTHCN G+LAT  YGTALGVIRA    G     Y  ETRPF QG+RLTA EL++D IP
Sbjct:   10 SLKILDQTRLPVEIKYRMAATYEEVAEAIEKMEVRGAPAIGAAAAYGYALGAIG---YSGELAGLSAHMEKVQHRLAETRPTAVNLFWALRRMEDRL-RDQHEAKELAEIRQALVAEAESIAEDDRRVNRLIGEHG-----NAIVTAEANILTHCNAGALATVEYGTALGVIRAAQQAGKKVHVYAGETRPFLQGARLTALELMNDHIP 209          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_SOLUE (Methylthioribose-1-phosphate isomerase OS=Solibacter usitatus (strain Ellin6076) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.288e-26
Identity = 79/218 (36.24%), Postives = 116/218 (53.21%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +  G + ++DQ +LPL   Y+  R+  +  +AIR+M++RG             + V   +A  G        +    E L  +RPTAVNL  A  ++K +         E   +    I  A+I+ ++D+A N+AIG  GA+ + +       +VLTHCN G+LATAGYGTALGVIRA    G     +  ETRPF QG+RLT +EL  D IP
Sbjct:    2 VETIEWTPGGVVMIDQTRLPLHEEYVTCRNYEEVATAIRDMIIRGAPAIGVAAAMGVAIGV--QHAGDGDLDGQVDLI---CETLAKTRPTAVNLFWAIDRMKRLYGSMRGRPLE--EIRSRLIAEAQIVREEDIAINRAIGRNGAALVPDGK-----TVLTHCNAGALATAGYGTALGVIRAAIESGKKIDVFADETRPFLQGARLTVWELQQDSIP 207          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_AZOVD (Methylthioribose-1-phosphate isomerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=mtnA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.288e-26
Identity = 84/219 (38.36%), Postives = 118/219 (53.88%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWS-AIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R G+L LLDQR LP E  +L   DSA G + AIR+MVVRG             +      A  G   D  + L +    L  SRPTAVNL  A  +++E +++      +      A    A  + + D   N  +   G   ++     S  ++LTHCNTG+LAT G+GTALGVIRA   EG+++R Y  ETRP+ QG+RLTA+EL  + IP
Sbjct:   11 IKAIEWRDGTLHLLDQRLLPQEERWLSY-DSASGVAGAIRDMVVRGAPAIGISAAYGVLLGARRRLAAGG---DWRAALEEDFRVLAESRPTAVNLFWALDRMRERLARL----KDGEDALVALEAEAVGIHESDREANLTMAQLGLELIRKH-SGSPQALLTHCNTGALATGGFGTALGVIRAAWLEGLVDRVYADETRPWLQGARLTAWELAEEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_LEPBL (Methylthioribose-1-phosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 81/220 (36.82%), Postives = 115/220 (52.27%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            + L+ I +    L LLDQR LP  T YL+ +   D   AIREMVVRG             + +  L++         S L  KL+ L+ SRPTAVNL     +      +A  +++    + ++  E A  ML++D+  N  +     S        S  +++THCNTG+LATAG+GTALGVIR+L   G     +  ETRP+ QG+RLTA+EL  + IP
Sbjct:    4 SGLKPILWTNKELILLDQRVLPGTTSYLKAKTLEDCIFAIREMVVRGAPAIAITGAFGIALYLNGLSS-----QPTFSQLKTKLDELLESRPTAVNLRLVIEEFFSRFPEADYSSANLEKMQKSAEEFALFMLEEDLENNLTLSKNALSLFPKS--PSSLNIITHCNTGALATAGHGTALGVIRSLRDAGHSLTVFADETRPYLQGARLTAWELKEEGIP 216          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_LEPBJ (Methylthioribose-1-phosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 81/220 (36.82%), Postives = 115/220 (52.27%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            + L+ I +    L LLDQR LP  T YL+ +   D   AIREMVVRG             + +  L++         S L  KL+ L+ SRPTAVNL     +      +A  +++    + ++  E A  ML++D+  N  +     S        S  +++THCNTG+LATAG+GTALGVIR+L   G     +  ETRP+ QG+RLTA+EL  + IP
Sbjct:    4 SGLKPILWTNKELILLDQRVLPGTTSYLKAKTLEDCIFAIREMVVRGAPAIAITGAFGIALYLNGLSS-----QPTFSQLKTKLDELLESRPTAVNLRLVIEEFFSRFPEADYSSANLEKMQKSAEEFALFMLEEDLENNLTLSKNALSLFPKS--PSSLNIITHCNTGALATAGHGTALGVIRSLRDAGHSLTVFADETRPYLQGARLTAWELKEEGIP 216          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PELTS (Methylthioribose-1-phosphate isomerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.870e-26
Identity = 71/210 (33.81%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   31 GSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            G L+LLDQ +LP E  Y++  +  D   AI+ + VRG             +    + A   T  +  + L  +   L ++RPTAVNL  A  ++  +     A   +A  +    +E A+ + ++D+  N+ +  YG   +    +     +LTHCN G+LATAGYGTALG++RA H  G     Y  ETRP  QG+RLTA+E++ + IP
Sbjct:   11 GLLELLDQTRLPFEKSYIKCTEYTDVAEAIKRLAVRGAPAIGAAAAYGLVLAARKIRA--NTKKEFLTELEARARELAATRPTAVNLHWALNRM--LRKMRLAEPEDAGLLCDLLLEEAQAIFREDITGNRRMARYGLELIPEGAR-----ILTHCNAGALATAGYGTALGLVRAAHEAGRRVSVYAGETRPLLQGARLTAWEMLQEGIP 211          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_FERNB6.690e-2737.38Methylthioribose-1-phosphate isomerase OS=Fervidob... [more]
MTNA_LEPBP7.554e-2739.42Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_LEPBA7.554e-2739.42Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_GEOMG7.554e-2737.23Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_DESHY9.865e-2736.84Methylthioribose-1-phosphate isomerase OS=Desulfit... [more]
MTNA_SOLUE1.288e-2636.24Methylthioribose-1-phosphate isomerase OS=Solibact... [more]
MTNA_AZOVD1.288e-2638.36Methylthioribose-1-phosphate isomerase OS=Azotobac... [more]
MTNA_LEPBL1.683e-2636.82Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_LEPBJ1.683e-2636.82Methylthioribose-1-phosphate isomerase OS=Leptospi... [more]
MTNA_PELTS2.870e-2633.81Methylthioribose-1-phosphate isomerase OS=Pelotoma... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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