FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_CARHZ (Methylthioribose-1-phosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=mtnA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.870e-26
Identity = 78/218 (35.78%), Postives = 114/218 (52.29%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKL-KEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            + ++ ++  +L LLDQ KLP+E  Y++++   +   AI  M VRG             + V           +   +L +  E L ++RPTAVNL  A  ++ K+ +     T  E   +  A +  A  +  +D+  NK IG+YG   +         S+LTHCN G+LATAGYGTALGV+RA    G L + +  ETRP  QG+RLTAFEL+ D I
Sbjct:    1 MDTMYWKDNTLFLLDQTKLPIEVKYVKLKTYEEVAEAIVSMKVRGAPAIGAAAAYGMVLGVMGYR----NDQNLEVYLKNVYETLKNTRPTAVNLFWALDRMWKKYLEVKNQTFEE---IANALLNEANSIFYEDIELNKKIGAYGLEVVPENA-----SILTHCNAGALATAGYGTALGVVRAAFEAGKLRKVFADETRPLLQGARLTAFELLEDGI 206          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THEMA (Methylthioribose-1-phosphate isomerase OS=Thermotoga maritima GN=mtnA PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.749e-26
Identity = 80/208 (38.46%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            SL+LLDQRKLP    Y+E +   +   AI+EM+VRG             + + +    S T      ++    E L  +RPTAVNL  A  +++++  + A    +  ++F+     A  M  +D+  NKAIG  GA     QL     ++LTHCN G+LAT  YGTALGVIRA    G   R +  ETRP+ QG+RLTA+EL+ D I
Sbjct:   14 SLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRDYKTGSLT-----DWMKQVKETLARTRPTAVNLFWALNRMEKVFFENA----DRENLFEILENEALKMAYEDIEVNKAIGKNGA-----QLIKDGSTILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGI 207          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ROSCS (Methylthioribose-1-phosphate isomerase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=mtnA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.749e-26
Identity = 79/222 (35.59%), Postives = 114/222 (51.35%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNL--NAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++ +++ +  G + L+DQR LP ET  +      +   AIR M +RG             +   +    A  G        L      L + RPTAVNLS A  +++E + +    A   N++ +A +E A  +L +D+A   AIG +G + +       +  VLTHCN G LATAGYGTAL  IR  H +G     Y  ETRPF QG+RLTA+EL+ +RIP
Sbjct:    3 SAFRTVWWEAGQVCLIDQRLLPNETSVVRCTTVEEVARAIRTMQIRGAPAIGCAAAYGMALAAHHAASTATDGDHQQVYDQLAAAKTILDAQRPTAVNLSWATRRVQEKVRRLIPAAP--NTLARAALEEAHAILAEDLAMCYAIGRHGVALIP-----PRGHVLTHCNAGGLATAGYGTALAPIRMAHEQGRPIHVYVDETRPFLQGARLTAWELLQERIP 217          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THEEB (Methylthioribose-1-phosphate isomerase OS=Thermosynechococcus elongatus (strain BP-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.896e-26
Identity = 85/212 (40.09%), Postives = 113/212 (53.30%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVS----SRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +QL+DQ +LP +    EI  +A+  +AIR M+VRG                  L A     +D   FL   LE + S    +RPTAVNL  A  +L     +   T  E     Q  +E A+ + ++DV T +AIG  G   L    +  K  +LTHCN G+LATAGYGTALGV+RA  + G LER Y  ETRP  QG++LTA+E V + IP
Sbjct:   20 VQLIDQTRLPEQYELREITTAAEMATAIRTMIVRGAPAIGVAAAFGMV-----LGAREYRGSDREGFL-IHLENIASQLRQTRPTAVNLFWAIDRLLAAAQQPTPTLEELQ---QHLLETAQTIAREDVQTCQAIGKNGLGVLPKTPE--KLRLLTHCNAGALATAGYGTALGVVRAAWAAGRLERLYADETRPRLQGAKLTAWECVQEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THESQ (Methylthioribose-1-phosphate isomerase OS=Thermotoga sp. (strain RQ2) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 79/208 (37.98%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            SL+LLDQRKLP    Y+E +   +   AI+EM+VRG             + + +    S T      ++    E L  +RPTAVNL  A  +++++  +      +  ++F+     A  M  +D+  NKAIG  GA     QL     ++LTHCN G+LAT  YGTALGVIRA    G   R +  ETRP+ QG+RLTA+EL+ D I
Sbjct:   14 SLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVTAAFGYVLGLRDYKTGSLT-----DWMKQVKETLARTRPTAVNLFWALNRMEKVFFENV----DRENLFEILENEALKMAYEDIEVNKAIGKNGA-----QLIKDGSTILTHCNAGALATVDYGTALGVIRAAMESGKRIRVFADETRPYLQGARLTAWELMKDGI 207          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THEP1 (Methylthioribose-1-phosphate isomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 79/208 (37.98%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            SL+LLDQRKLP    Y+E +   +   AI+EM+VRG             + + +    S T      ++    E L  +RPTAVNL  A  +++++  +      +  ++F+     A  M  +D+  NKAIG  GA     QL     ++LTHCN G+LAT  YGTALGVIRA    G   R +  ETRP+ QG+RLTA+EL+ D I
Sbjct:   14 SLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVTAAFGYVLGLRDYKTGSLT-----DWMKQVKETLARTRPTAVNLFWALNRMEKVFFENV----DRENLFEILENEALKMAYEDIEVNKAIGKNGA-----QLIKDGSTILTHCNAGALATVDYGTALGVIRAAMESGKRIRVFADETRPYLQGARLTAWELMKDGI 207          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THEAB (Methylthioribose-1-phosphate isomerase OS=Thermosipho africanus (strain TCF52B) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 80/212 (37.74%), Postives = 116/212 (54.72%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXV---EVF--NLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L L+DQRK+PL   Y+  +   +   AI++MVVRG             +   E+F  + NAF          + +  E L ++RPTAVNL  A  ++++ + K      +   + +   E A  + K+D+  NKAIG YGA  L++       +VLTHCN G+LAT  YGTALGVIRA   +G   + +  ETRP+ QG+RLTA+EL+ D I
Sbjct:   15 LILIDQRKIPLVEEYVSCKSYKEVAVAIKDMVVRGAPAIGASAAFGYVLGAREMFVEDFNAF-------VKKMEEVKEVLANTRPTAVNLFWALNRMEDSLKKYG----KIEGILEYLEEEAMNIAKEDIEVNKAIGRYGAELLKDG-----DTVLTHCNAGALATVDYGTALGVIRAAVEQGKKIKVFADETRPYLQGARLTAWELMKDGI 210          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSM (Methylthioribose-1-phosphate isomerase OS=Geobacter sp. (strain M21) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 81/230 (35.22%), Postives = 114/230 (49.57%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLE-----------YLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S ++I +R   + ++DQ +LP E +Y E  D      AIR MVVRG                  + A  G A  A   + D  +            +  +RPTAVNL     ++K +  +      + NS+ +     A  +  +D+A  K IG +GA+ ++        S+LTHCN G LATAGYGTALGVIR  H  G   R +  ETRP+ QG+RLTA+EL+ D IP
Sbjct:    2 SFRTIEWRDNKVIMIDQTRLPAEEVYNEYTDFQSVAQAIRGMVVRG-------------APAIGIAAAMGVALGAREIIADSFDTFYRQLENVCDVIGRTRPTAVNLFWGLERMKRVALQHKEL--DLNSIRELLKAEAISIETEDLAICKEIGRHGAALVKEGA-----SILTHCNAGGLATAGYGTALGVIRGAHEAGKGIRVFADETRPWLQGARLTAWELMKDSIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GEOBB (Methylthioribose-1-phosphate isomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 82/230 (35.65%), Postives = 113/230 (49.13%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKL-----------EYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S ++I +R   + ++DQ +LP E +Y E  D      AIR MVVRG                  + A  G A  A   + D             E +  +RPTAVNL     ++K +  +        NS+ +     A  +  +D+A  K IG +GA+ ++        S+LTHCN G LATAGYGTALGVIR  H  G   R +  ETRP+ QG+RLTA+EL+ D IP
Sbjct:    2 SFRTIEWRDNKVIMIDQTRLPAEEVYNEYTDFQGVAQAIRGMVVRG-------------APAIGIAAAMGVALGAREIIADSFDTFYRQLENVCEVIGRTRPTAVNLFWGLERMKRVALQHKEL--NLNSIRELLKAEAISIETEDLAICKEIGRHGAALVKEGA-----SILTHCNAGGLATAGYGTALGVIRGAHEAGKGIRVFADETRPWLQGARLTAWELMKDSIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ANADF (Methylthioribose-1-phosphate isomerase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 82/220 (37.27%), Postives = 116/220 (52.73%), Query Frame = 1
Query:    7 LQSICYRRGS--LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L+ + Y  G   +++LDQR+LP E ++L++    +   AI+++ VRG                + L   S   A+ A  L +  E LV +RPTAVNL+ A  ++   +    A          A +E A  +  +D A  + IG+ GA+ L       + SVLTHCN G+LATAGYGTALGV+RA    G     +  ETRPF QG+RLTA+EL  D IP
Sbjct:    6 LRPVIYDEGRDVVRVLDQRRLPSEEVWLDLASCDEVVQAIKDLTVRGAPAIGV-------AAAYGLALESRRGAEPAR-LREASERLVHARPTAVNLAWAVRRMSRRLGLGPA----------ALLEEAHAIRDEDEAACRRIGALGAALLP-----PRASVLTHCNAGALATAGYGTALGVVRAAVEGGNPVTVFADETRPFLQGARLTAWELKRDGIP 202          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_CARHZ2.870e-2635.78Methylthioribose-1-phosphate isomerase OS=Carboxyd... [more]
MTNA_THEMA3.749e-2638.46Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA_ROSCS3.749e-2635.59Methylthioribose-1-phosphate isomerase OS=Roseifle... [more]
MTNA_THEEB4.896e-2640.09Methylthioribose-1-phosphate isomerase OS=Thermosy... [more]
MTNA_THESQ8.352e-2637.98Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA_THEP18.352e-2637.98Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA_THEAB8.352e-2637.74Methylthioribose-1-phosphate isomerase OS=Thermosi... [more]
MTNA_GEOSM8.352e-2635.22Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_GEOBB8.352e-2635.65Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_ANADF8.352e-2637.27Methylthioribose-1-phosphate isomerase OS=Anaeromy... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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