FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ROSS1 (Methylthioribose-1-phosphate isomerase OS=Roseiflexus sp. (strain RS-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 78/221 (35.29%), Postives = 112/221 (50.68%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNL-NAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++ +++ +  G + L+DQR LP ET  +      D   AIR M +RG             +   +  +   G  A   + L +    L + RPTAVNLS A  ++ E     +      + V Q  +E A  +L +D+A   AIG +G + +       +  VLTHCN G LATAGYGTAL  +R  H +G     Y  ETRPF QG+RLTA+EL+ +RIP
Sbjct:    3 SAFRTVWWEAGQVCLIDQRLLPNETRIVRCAAVEDVAYAIRTMQIRGAPAIGCAAAYGMALAACSAAHDAVGDVARIYARLAEAKALLDAQRPTAVNLSWATRRVLE--RAQSLNDPSPHDVAQRVLEEAHAILAEDLAMCHAIGRHGVALIP-----PRGHVLTHCNAGGLATAGYGTALAPVRTAHEQGRPIHVYVDETRPFLQGARLTAWELIQERIP 216          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA2_PETMO (Methylthioribose-1-phosphate isomerase 2 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=mtnA2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.489e-25
Identity = 82/212 (38.68%), Postives = 111/212 (52.36%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSS----RPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            SL L+DQR LP+E  Y+E ++  D  ++I++MVVRG                F L A   +     +   +KLE + +S    RPTAVNL  A  ++ +I+     T  E N +     E A  +  +D+  NK IG  G + L     N   +VLTHCN G+LAT  YGTALGVIRA    G   + Y  ETRP+ QG+RLT +ELV   I
Sbjct:   15 SLILIDQRYLPIEEKYVECQNYLDVANSIKDMVVRGAPAIGATAAFG-----FVLGAKEFSYLSDKNLFSNKLEEVKNSLSKTRPTAVNLFWALNRMDKILKDNLPT-KEINDLVTILEEEALKIAYEDIEINKQIGKNGEALL-----NDGDTVLTHCNAGALATVDYGTALGVIRAAVENGKDIQVYADETRPYLQGARLTVWELVKSGI 215          

HSP 2 Score: 21.1718 bits (43), Expect = 3.489e-25
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  687 GCIDEDGRVSAVIVGA 734
            G + + G+++AVIVGA
Sbjct:  226 GWVMKQGKINAVIVGA 241          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: YQJQ_CAEEL (Uncharacterized protein C01G10.9 OS=Caenorhabditis elegans GN=C01G10.9 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.145e-25
Identity = 74/218 (33.94%), Postives = 114/218 (52.29%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L S+ +   +L++LDQ  LP E  Y+ +   +D ++ I+ M VRG             +E+   +       D+ S +  K+ +L+SSRPTAV+L ++   LK I+     +        ++Y+    +   + +     + +     L       K +V+T CNTGSLAT  +GTALGVIRALHSE  L+  Y  ETRP+NQG RLT+ EL+H  +P
Sbjct:   25 LDSLKFDGTNLEVLDQLLLPHEFKYIPVEGVSDAFAVIKSMQVRGAPLIAVVGSLGLLLEIQKASEL-----DSESII-QKINFLISSRPTAVDLRNSLNGLKPILESQDYSDVVKLEKCRSYL--LNVYTDEKLQNRILVWNAYQELLSAFPDKEKLTVMTICNTGSLATISWGTALGVIRALHSENRLKLVYVLETRPYNQGIRLTSIELLHGEVP 234          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GLOVI (Methylthioribose-1-phosphate isomerase OS=Gloeobacter violaceus GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.145e-25
Identity = 81/206 (39.32%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   43 LLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L+DQ  LP     +EIR S    +AIR M+VRG                  L        D  + L      L ++RPTAVNL  A  ++         T +  +  F      A  +L+ D+AT +AIG +G   L       +  +LTHCN G+LATAGYGTALGV+R+ H    LER Y  ETRP  QG+RLTA+ELVH+RIP
Sbjct:   22 LIDQTVLPGIYRTIEIRTSDQMATAIRTMIVRGAPAIGVAAAFGMV-----LGWQEAPQGDPITHLERVAATLRATRPTAVNLFWAIDRM--------LTVARRDPSFARLEREATAILEGDIATCRAIGEHG--LLALPAAPERLRLLTHCNAGALATAGYGTALGVVRSAHRADRLERVYADETRPRLQGARLTAWELVHERIP 212          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ACIBL (Methylthioribose-1-phosphate isomerase OS=Acidobacteria bacterium (strain Ellin345) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.145e-25
Identity = 82/208 (39.42%), Postives = 111/208 (53.37%), Query Frame = 1
Query:   43 LLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLK---EIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L+DQ KLP E +Y+      +   AI++M+VRG             + V +  A   T ++     G     +  +RPTAVNL  A  +++   E +S       +A  VF    EA  I L +D+A N+A+G  GA  +      S+  VLTHCN G+LATAGYGTALGVIRA    G   R +  ETRPF QG+RLTA+EL+ D I
Sbjct:   18 LVDQTKLPTEEVYVTCGTYEEVAVAIKDMIVRGAPAIGVTAAMGIALGVRDAKA--STLSELRQMFGMICRTMGETRPTAVNLFWAIRRMQRKFEELSNMPLAVIKAEMVF----EAKRIHL-EDIAANQAMGRNGAVLMP-----SEGGVLTHCNAGALATAGYGTALGVIRAAVESGKNIRVFADETRPFLQGARLTAWELMKDGI 213          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA1_THELT (Methylthioribose-1-phosphate isomerase 1 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=mtnA1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.693e-25
Identity = 77/207 (37.20%), Postives = 112/207 (54.11%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLG---DKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELV 645
            SL L+DQRKLP    Y+E +  A+   AI++MVVRG                + L A         +F+    +  + L S+RPTAVNL  A  ++++ +  + A       + +  I+ AE    +D+  NK IG++G + L++       +VLTHCN G+LAT  YGTALGVIRA    G   + Y  ETRP+ QG+RLTA+EL+
Sbjct:   14 SLILVDQRKLPHVVNYVECKSYAEVARAIKDMVVRGAPAIGATAAFG-----YVLGAKEAATLKNQNFIDVMKNVYDVLASTRPTAVNLFWALNRMEKCVDLSKAVDEILEDLEKEAIKIAE----EDIRINKTIGTHGQTLLKDGC-----AVLTHCNAGALATVDYGTALGVIRAAVESGKKIKVYVDETRPYLQGARLTAWELL 206          

HSP 2 Score: 20.7866 bits (42), Expect = 7.693e-25
Identity = 8/16 (50.00%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  687 GCIDEDGRVSAVIVGA 734
            G + + G++ AVIVGA
Sbjct:  221 GWVMKQGKIDAVIVGA 236          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PSEF5 (Methylthioribose-1-phosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 79/219 (36.07%), Postives = 114/219 (52.05%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++I +R  +L LLDQR LP E  ++    +A    AIR MVV G             +     +   G   D  + L +    LV + P AVNLS A  +++E + +    A        A +EA  + + + D   N  +   G   ++    N + ++LTH NTG+LAT G+GTALGVIRA   EG++ER Y  ETRP+ QGSRLTA+EL  + IP
Sbjct:   11 VRAIEWRDSTLYLLDQRALPFEESWIAYDSAAGVAEAIRSMVVCGAPAIGISAAYGLVLAACGRSVAGG---DWFAALEEDFTLLVDAAPAAVNLSWALNRMRERLERVREHADPL-----AALEAEALAIHESDREANLTMAQLGVDLIRRHQGNPQ-ALLTHSNTGALATGGFGTALGVIRAAWLEGMVERVYADETRPWLQGSRLTAWELASEGIP 220          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_MOOTA (Methylthioribose-1-phosphate isomerase OS=Moorella thermoacetica (strain ATCC 39073) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 76/215 (35.35%), Postives = 114/215 (53.02%), Query Frame = 1
Query:   16 ICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            I +R G ++++DQ  LP E + +  R   + W AI+++ VRG             + V +  A      +A   L     YL SSRPTAVNL  A  ++++ +  AAA   +  ++ +  ++ A  +  +D A  +AIG +GAS L +       +VLTHCN G+LATA YGTAL  I  L + G + + +  ETRP  QG+RLT +EL    IP
Sbjct:    8 ISWRDGQVEMIDQTLLPGELVIIRPRTVEEMWDAIKKLKVRGAPAIGIAAALGLYLAVKDSGARDKAGFEAE--LQKAAAYLASSRPTAVNLFWALKRVQQAV--AAAATDDVAALKELVLKEALAIRDEDEAMCRAIGEHGASLLADAE-----AVLTHCNAGTLATARYGTALAPIYTLAARGKVLKVFADETRPLLQGARLTTWELHQAGIP 213          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_HELMI (Methylthioribose-1-phosphate isomerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 77/211 (36.49%), Postives = 105/211 (49.76%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGD---KLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L LLDQ KLPL   Y+E  D      AI+++ VRG             +   N      T  D A F  D    +  L  +RPTAVNL  A  +++ ++      + +     +  I  A+ +  +D A N+ +G YG   +          +LTHCN G+LATAG+GTALGVIRA H  G     +  ETRP  QG+RLTA+EL+ D IP
Sbjct:   11 LLLLDQTKLPLTEEYIECWDHVILCDAIKKLKVRGAPAIGAAAAFGVALAALNY-----TGEDRAEFEADVKKAIADLGKTRPTAVNLFWALRRMEAVLEDIRTYSVKEQQ--ERLIAEAKAVFDEDRAMNEQMGQYGLELIPESA-----GILTHCNAGALATAGFGTALGVIRAAHRAGKEISVFADETRPLLQGARLTAWELMQDGIP 209          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GEOLS (Methylthioribose-1-phosphate isomerase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=mtnA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25
Identity = 80/231 (34.63%), Postives = 115/231 (49.78%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLE-----------YLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLK-DDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S ++I +R  ++ ++DQ +LP+E +Y    D      AIR MVVRG                  + A  G A  A   + D  E            +  +RPTAVNL  A  ++K+   KA +         +  ++   I ++ +D+A  K IG +GA  +         ++LTHCN G LATAGYGTALGVIRA H  G   + +  ETRP+ QG+RLT +EL+ D IP
Sbjct:    2 SFRTIEWRDDAVIMIDQTRLPMEEVYQRYTDFNAVAEAIRGMVVRG-------------APAIGVAAAMGVALGAREIIADTQESFFRQLENVCDVMARTRPTAVNLFWAIERMKQ---KALSLKGNPLETIRTGLKEEAIRIEAEDLAICKNIGRHGADLIPEGA-----TILTHCNAGGLATAGYGTALGVIRAAHEAGKRIQVFSDETRPWLQGARLTTWELMKDSIP 211          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_ROSS13.174e-2535.29Methylthioribose-1-phosphate isomerase OS=Roseifle... [more]
MTNA2_PETMO3.489e-2538.68Methylthioribose-1-phosphate isomerase 2 OS=Petrot... [more]
YQJQ_CAEEL4.145e-2533.94Uncharacterized protein C01G10.9 OS=Caenorhabditis... [more]
MTNA_GLOVI4.145e-2539.32Methylthioribose-1-phosphate isomerase OS=Gloeobac... [more]
MTNA_ACIBL4.145e-2539.42Methylthioribose-1-phosphate isomerase OS=Acidobac... [more]
MTNA1_THELT7.693e-2537.20Methylthioribose-1-phosphate isomerase 1 OS=Thermo... [more]
MTNA_PSEF59.234e-2536.07Methylthioribose-1-phosphate isomerase OS=Pseudomo... [more]
MTNA_MOOTA9.234e-2535.35Methylthioribose-1-phosphate isomerase OS=Moorella... [more]
MTNA_HELMI9.234e-2536.49Methylthioribose-1-phosphate isomerase OS=Heliobac... [more]
MTNA_GEOLS9.234e-2534.63Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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