FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PELPD (Methylthioribose-1-phosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.206e-24
Identity = 81/230 (35.22%), Postives = 114/230 (49.57%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLE-----------YLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S ++I +R  S+ ++DQ +LP E +Y    D      AIR MV+RG                  + A  G A  A   + D  E            +  +RPTAVNL  A  ++K +    A      + + Q   E A  + ++D+   + IG +GA+ +         +VLTHCN G LATAGYGTALGVIRA H  G   + +  ETRP+ QG+RLTA+ELV + IP
Sbjct:    2 SFRTIEWRDDSVIMIDQTRLPGEEVYNTYTDFKAVAEAIRGMVIRG-------------APAIGVAAAMGIALGARDIIADTHESFFRQLENVCDVMARTRPTAVNLFWAIERMKRVAE--AGRDKPLDGIRQLLKEEAIRVEEEDLTICRNIGKWGATLIPEGA-----TVLTHCNAGGLATAGYGTALGVIRAAHEAGKKIQVFADETRPWLQGARLTAWELVKEGIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GEOUR (Methylthioribose-1-phosphate isomerase OS=Geobacter uraniireducens (strain Rf4) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.206e-24
Identity = 78/230 (33.91%), Postives = 115/230 (50.00%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLE-----------YLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S ++I +R   + ++DQ +LP E +Y E  D      AIR M++RG                  + A  G A  A   + D  E            +  +RPTAVNL  A  ++K +    +    + NS+ +     A  + ++D+   +AIG  GA  ++        ++LTHCN G LATAGYGTALGVIRA H  G   + +  ETRP+ QG+RLT++EL+ D IP
Sbjct:    2 SFRTIEWRDNKVVMIDQTRLPGEEVYNEYTDFQSVAEAIRGMIIRG-------------APAIGVAAAMGIALGAREIIADTHESFFRQLDNVCNVMARTRPTAVNLFWAIERMKRVAE--SHRDKDLNSIREILKAEAIRIEEEDLEICRAIGRNGAPLIKEGA-----TILTHCNAGGLATAGYGTALGVIRAAHEAGKRIQVFADETRPWLQGARLTSWELMKDGIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSF (Methylthioribose-1-phosphate isomerase OS=Geobacter sp. (strain FRC-32) GN=mtnA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.206e-24
Identity = 80/231 (34.63%), Postives = 115/231 (49.78%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLE-----------YLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKD-DVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S ++I +R   + ++DQ +LP E +Y    D      AIR M++RG                  + A  G A  A   + D  E            L  +RPTAVNL  A  ++K +   A +         +  ++A  I +++ D+   +AIG +GA  ++        +VLTHCN G LATAGYGTALGVIRA H  G   + +  ETRP+ QG+RLTA+EL+ D IP
Sbjct:    2 SFRTIEWRDNKVVMIDQTRLPGEEVYNVYEDFQSVAEAIRGMIIRG-------------APAIGVAAAMGVALGAREIIADTYESFSRQLTNVCDVLARTRPTAVNLFWAIERMKRV---AESNKDRDLHFIRETLKAEAIRIEEEDLEICRAIGRHGAPLIREGA-----TVLTHCNAGGLATAGYGTALGVIRAAHEAGKNIQVFADETRPWLQGARLTAWELMKDGIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_DESDG (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio desulfuricans (strain G20) GN=mtnA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.695e-24
Identity = 78/213 (36.62%), Postives = 112/213 (52.58%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF---LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLE-RAYCSETRPFNQGSRLTAFELVHDRIP 660
            +L LLDQR LP         D AD   A++ MVVRG             +  +     +G  A  A +   L   LE L  +RPTAVNL  A  +++ +         + N++   +++ AE + ++D + N+AIG +GA+ +Q+        ++THCN G+LATAGYGTALGV+R     G        +ETRPF QG+RLTA+EL  D IP
Sbjct:   13 TLILLDQRVLPTVEEDFYCNDVADTIYALQTMVVRGAPAIGVTAAYGCCLAAYE----AGHPAPHAQWQKELDTLLEKLAQARPTAVNLRWAVERMRSVWKSMGDP--DLNTLIARWLDEAEAIHEEDKSINRAIGRHGATLIQDN-----DCIMTHCNAGALATAGYGTALGVVRGAVDAGRTGITVIANETRPFLQGARLTAYELHKDGIP 214          

HSP 2 Score: 20.7866 bits (42), Expect = 1.695e-24
Identity = 8/17 (47.06%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  684 CGCIDEDGRVSAVIVGA 734
            CG + + G V  V+VGA
Sbjct:  223 CGLLMQRGMVQKVVVGA 239          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_SYNP2 (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=mtnA PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.696e-24
Identity = 82/224 (36.61%), Postives = 113/224 (50.45%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSS----RPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            NS+  I ++   + L+DQ  LPL    +EI+       AIR M+VRG                  L A      D   FL +KLE + ++    RPTAVNL  A  ++   +  A     E  ++    +  A+ +  +D+AT +AIG  G + L    +  K ++LTHCN G LATAGYGTALGVIR+   E  L   Y  ETRP  QGS+LT +E V + IP
Sbjct:    3 NSINPIVWQEDCVLLVDQTLLPLAYKVVEIKTYQAMAEAIRTMIVRGAPAIGVSAAYGLY-----LGAKEIQTTDRTIFL-EKLEAIAATLRQTRPTAVNLFWAIDRVMATVQGATGNIPELQNLI---LNTAKAIHNEDLATCQAIGDQGLAVLPETPE--KLTILTHCNAGGLATAGYGTALGVIRSAWRENRLGMVYADETRPRLQGSKLTTWECVQEGIP 215          

HSP 2 Score: 20.4014 bits (41), Expect = 1.696e-24
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  699 EDGRVSAVIVGA 734
            + GR+ AV+VGA
Sbjct:  229 QQGRIDAVVVGA 240          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_SYNAS (Methylthioribose-1-phosphate isomerase OS=Syntrophus aciditrophicus (strain SB) GN=mtnA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.057e-24
Identity = 83/235 (35.32%), Postives = 118/235 (50.21%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTA-ADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKA--AATASEANS-------------VFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S  +I +R  ++ LLDQ+ LP E  YL      +  +AIR++ VRG             +   +L   S  A  +    L D+      +RPTA NL  A  ++K    +     T+SE +S             V +A +  A  M ++DVA N+ IG YG   +++      + +LTHCN G+LATAGYGTALGVIRA    G   + +  ETRP  QG+RLTA+EL  + IP
Sbjct:    4 SFTTIAWRNDAVLLLDQQALPGEERYLTCTRFEEVLTAIRDLTVRGAPAIGVASAMGIALGALSLPDDSPEAFCNGFEALCDRF---AQARPTARNLFWAVERMKRCFGEHFHPDTSSECSSAAPGKEIARTLAAVRKALVAEARRMAEEDVAINRRIGHYGQVLIRDG-----YRILTHCNAGALATAGYGTALGVIRAAREAGKQVQVFADETRPVLQGARLTAWELQKENIP 230          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_TRIEI (Methylthioribose-1-phosphate isomerase OS=Trichodesmium erythraeum (strain IMS101) GN=mtnA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.509e-24
Identity = 79/218 (36.24%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   16 ICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLV---SSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            I ++   + L+DQ  LP E   +EI    +   AI+ M+VRG                  L A      D   FL    E  V    +RPTAVNL  A  ++ ++ +K   T  E   + +A +E A+ + ++D+ T K IG      L    K  K ++LTHCN G+LATAGYGTALGVIR+   +G L + Y  ETRP  QG++LT +E V + IP
Sbjct:   11 ITWKNDHVVLIDQTCLPEEYKTVEISSYEEMAVAIKTMIVRGAPAIGVSVAYGMY-----LGARETVTNDRNEFLKQLEEIAVIFRRTRPTAVNLFWAIERILKVANKTNGTVKE---IQEAVLETAKKIHQEDLETCKNIGDRAVEILPT--KPEKLNILTHCNAGALATAGYGTALGVIRSAWRDGRLGKVYADETRPRLQGAKLTTWECVQENIP 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_PERMH (Methylthioribose-1-phosphate isomerase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.583e-24
Identity = 75/208 (36.06%), Postives = 108/208 (51.92%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L +++Q KLP E  +LE+        AI +M++RG             + V  +    G + D    + D+L+   ++RPTAVNL  A  ++ +   +          +     + AE +  +D   NKAIG YG   L  +      +VLTHCNTG+LAT+G+GTALGVIR+    G     Y  ETRP+ QGSRLTA+ELV + IP
Sbjct:   17 LYVINQLKLPKEKEWLELSTYQQVAEAIEKMIIRGAPLIGIVGAYGFAIGVKQI-LDEGRSLDDVRDVFDRLK---NTRPTAVNLFWALERVWKKFERWTEEGRSGEELVNLLFKEAERIDLEDYHANKAIGGYGQVLLPERC-----NVLTHCNTGALATSGWGTALGVIRSAFENGKDITVYVDETRPYLQGSRLTAWELVEEGIP 215          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XANOR (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae GN=mtnA PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 77/218 (35.32%), Postives = 117/218 (53.67%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYI-EAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ + +   +L+LLDQRKLP    ++    S     AI  + VRG             +   ++ A  G AA     L   L  L ++RPTAVNL+ A  +++ ++  A A        ++A I   A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPLLWTGDALELLDQRKLPFVVEHVRCDTSDAVAEAIHSLAVRGAPAIGIAAGWGVALAARDIAADDGNAA--LQKLEPALLRLNAARPTAVNLAWALMRMRRVLGAAGAD-------WRAVIAREAQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XANOP (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 77/218 (35.32%), Postives = 117/218 (53.67%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYI-EAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ + +   +L+LLDQRKLP    ++    S     AI  + VRG             +   ++ A  G AA     L   L  L ++RPTAVNL+ A  +++ ++  A A        ++A I   A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPLLWTGDALELLDQRKLPFVVEHVRCDTSDAVAEAIHSLAVRGAPAIGIAAGWGVALAARDIAADDGNAA--LQKLEPALLRLNAARPTAVNLAWALMRMRRVLGAAGAD-------WRAVIAREAQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELQQDGI 218          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_PELPD1.206e-2435.22Methylthioribose-1-phosphate isomerase OS=Pelobact... [more]
MTNA_GEOUR1.206e-2433.91Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_GEOSF1.206e-2434.63Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_DESDG1.695e-2436.62Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_SYNP21.696e-2436.61Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_SYNAS2.057e-2435.32Methylthioribose-1-phosphate isomerase OS=Syntroph... [more]
MTNA_TRIEI3.509e-2436.24Methylthioribose-1-phosphate isomerase OS=Trichode... [more]
MTNA_PERMH4.583e-2436.06Methylthioribose-1-phosphate isomerase OS=Persepho... [more]
MTNA_XANOR1.021e-2335.32Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANOP1.021e-2335.32Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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